XLOC_021779 (XKR7)


Basic Information

Item Value
gene id XLOC_021779
gene name XKR7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30859086 ~ 30890850 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043206
ATCTACTCTCTTTTCTACAACAAACATGGCCGCGAAATCAGACGGTACAGCCGTTTCTTTGCAGAATGACATTCCGCCGACGTGCCTGCCCGGGCTGGAGAAGCGCTCGCCCGAGTGGCGTCCCGTCGGGAAGGAGTACTCCCTCCTGGACTGCTGCTGGACCCTCTGCGCCCTCTTGGTGTTTTTCTCGGACGGCGCTTCAGACCTGTGGCTGGCTGCCGACTATTATCTCAGGCGGGACTACTGGTGGTTCGCGCTGACACTGGTTTTTATCATCATTCCCTCTGTGGTGGTGCAGGTGCTCAGCTTCCGATGGTTCGCTTACGATTATTCGGACGCCAACGGGAGCGGCTCGGCTGCGGCTGCCATGGTGGCGGCGTCCAATGCGGAGAGCCACTTCAGCACCAAGGACAGCGATCAGCGGGGCGCTGGCCGCTCCGCTGCGGTCACCGGGAGCCGGAGCAGCGCGCAGAGCTGCTGCAGAGTCTGCGTGTGGCTCTTCCAGAGCGCCGTGCACGTCCTTCAGCTGGCACAGGTCTGGAGGTATGTCCATGCCTTATATCTGGGTGTGCAGAGCCGCTGGCGTGGGGAGCACGAGCACAAACACTACTACTGGCGCACAATGTTTGAGAACGCTGATATCAGCATGCTGAGGCTGCTGGAGACCTTCCTGAAGAGCGCACCTCAGCTCGTCCTGCAGCTCAGCATTATGGTCCAGACCGGCCAGATTCTCCCTTTACAGGGTCTGTCCGCGTCGGCCTCTCTAGTGTCTCTGGGCTGGATGATGGCGTCTTATCAGAAGGCATTGCGAGACTCTCGTGACGACAAGCTTCCCATGTCGTATAAAGCAGTGGTGGTGCACATGCTGTGGCATCTGTTCACCGTGGGAGCCCGCGCCATGGCTTTTGCCCTCTTCGTTTCCCTCTTCCAGCTCTACTTTGGCATTTTCATCGTGGCCCACTGGTGCGCCATGACCTTCTGGATCATCCAAGGCGAGACGGACTTCTGTATGTCCAAATGGGAGGAGATCATCTACAACATGATGGTGGGCATTGTGTATATATTCTGCTGGTTCAGCGTTCGTGAGGGTCCCACGCGGGGCCGTCTTCTGCTGTACAGCCTTATAATCTTGGCTGAAAACGTGGCTCTAACAGCTGTGTGGTACATATACCGCAGCCCGCGTACATCTGACTTTTACGCCGTGGTTGTGGTGTGTGTTGTGGCCTGTAGCTACGCTTTgggcacattttttatgtttgtctACTACTGCCTTTTACATCCTGATGGCCCTGTACCCGGGGCCTATCTTGGATGTTGTGGCGTGCAGGTGGGTGCTGTTTCAGATCCTTGTGTCTCGTCACCTACATCCGCTCCTCCTCTGGATGTGGTGAGCAGCCCTCCTCGGACTCTTCAGAGGACTAAAGGAATAGATTCAGTACCAATGGGAGACATCGGGGAAGTCTTTAAGATGCGGACCCTTAAGGCCTCTCGAAACGCGGCACCTCGCGTCACCCCAAGGACAGAGGGGCCGGTAATTCGTATCGACCTTCCCAGGAAACAGTACCCAGCCTGGGATGCCCACTTCATTGATCGTAGACTGAGAAAGACCATTTTGGTACTAGAAGGTGCGGCTCCTGTCACACCAAGGATCCAGTACCGCTGTCTAGGCACACCGAAGGAAGTGATGGAATATGAGACGACAGTCTGAAACATTctccaaataaaaatgtaatgcatttgtggcaaaaaaaaagtCTAGGAGTCCAGGTTTATTTGGCGGAGTGGAAGAGTTTGTTGGATCTCCACATGACTCCCTATTGACTTGTCAGCTGTGGAGGAACAGGATGCCCTGGTGTATAGAAAAGAGCCACCCTGTGGTAACATTAGATATTACTGGTTATTGAGTTAGGAAGGGGTGTTCAAACCTGCTCC

Function

symbol description
xkr7 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR7 (XK related 7).

GO:

id name namespace
GO:0070782 phosphatidylserine exposure on apoptotic cell surface biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:1902742 apoptotic process involved in development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-336 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR7 (XK related 7).

Ensembl:

ensembl_id ENSDARG00000036952

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043206 True 1932 mRNA 0.55 3 30859086 30890850

Neighbor

gene id symbol gene type direction distance location
XLOC_021778 npbwr2a coding upstream 13227 30827959 ~ 30845859 (+)
XLOC_021777 AL845357.1 coding upstream 86200 30764287 ~ 30772886 (+)
XLOC_021776 asxl1 coding upstream 106533 30730121 ~ 30752553 (+)
XLOC_021775 dnajc11a coding upstream 134177 30707837 ~ 30724909 (+)
XLOC_021774 NA coding upstream 425701 30402314 ~ 30433385 (+)
XLOC_021780 cables2a coding downstream 7163 30898013 ~ 30919307 (+)
XLOC_021781 si:ch211-197l9.2 coding downstream 76836 30967686 ~ 30981438 (+)
XLOC_021782 BX649257.1 coding downstream 88535 30979385 ~ 30979499 (+)
XLOC_021783 si:ch211-197l9.2 coding downstream 94680 30985530 ~ 30996756 (+)
XLOC_021784 selenoi coding downstream 109393 31000243 ~ 31022418 (+)
XLOC_021767 NA non-coding upstream 1012207 29840859 ~ 29846879 (+)
XLOC_021766 BX571850.1 non-coding upstream 1270528 29588444 ~ 29588558 (+)
XLOC_021765 NA non-coding upstream 1275807 29580543 ~ 29583279 (+)
XLOC_021785 NA non-coding downstream 187714 31078564 ~ 31085951 (+)
XLOC_021790 CR759830.1 non-coding downstream 542423 31433273 ~ 31433348 (+)
XLOC_021791 CR759830.2 non-coding downstream 542729 31433579 ~ 31433663 (+)
XLOC_021793 BX927365.3 non-coding downstream 776579 31667429 ~ 31667543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_12580225_12599311 NA coding CI01000001 null 12579974 ~ 12599587 (+)