XLOC_021787 (irak1bp1)


Basic Information

Item Value
gene id XLOC_021787
gene name irak1bp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31245395 ~ 31248952 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043213
ATAGCGCCACGTTGGTTTACCAACAGTCATGGCGCACAGCCCGTCTCGTGTCTTTGCTGCACTTTCACCGTCTGCTGGTGATGTTTACCGAGACGAAAACCAGTCGGTGTTTAACCGAGGTCGCAAGCAAACACATTTATCCGCTCAAAGCAACGTGAGGGTGATTGAGGTGACGGGCTGCGCGGAGATATCCAGTCCACCAGACCGCGCCTGCGTCTCCATCAGCGTCaaaaacagcaaagaaaatgtCAACGACGTGACCAACAGCGTTACCCGAAGACTGGAATACATATTGCAGACCGCCAGACAGCACGACGTCAAGGAAGAAAACATCACCGTTACCAAGCATTTACAAAGAGATGAGGATCTCTTCCACATGCAGGCTGAGGTGCTTGTGGTGTTTTTAGACTTTGAGAAGATGCAGCAAGCGCGCACAGTTTTGATTGAGAAACTggacaaaagtgtgtgtgttggtgACCCTTACTACAGTCACAGTGCTGAAAGCCTCAGTTTGTTAAGACGACGTGTGTGTTTGGAAGCGGTGGACAATGCCCGACTAAAAGCCAGCGAGGCGTGCTGTATTCTGGGCCAGGCTCTGGGACGTCCGCTGTTGGTCCGTGAGGAGGAATCTCGAGAGTGGAGCAGCAGTCAGCAGGATGCCTCTGGCTCTCCTCTAACACTACACCCCAGGACTGATGCTACGCTAATCTCTGCCACTTCACGCATGTTTGTCACCTTTGAACTGCGACCTAAGGACAATAACAGGAGGAAGTTTTAGTTTGttcaacaataatataattactacACATTTTTATGTATGTTAACGCCTATAAAGAACCACTGATATTCAGAAAAGAGTCCACAGTGAAGATAACACTATTTACTCCCATTGTTGTCGTAATGAAAAACAACTATACTGATGAATAGCACTGTGTGCAGCTTTAATGAACATGTTATTCAAATAATCAGTGTTTACTTATTAGCTGGCATTTTCCATTTATTGACACTAACGAAATGTATCATTGGACCTCAACTTTGgataataaaaagtttaacaaagtcA
>TCONS_00043214
CAGCCCGTCTCGTGTCTTTGCTGCACTTTCACCGTCTGCTGGTGATGTTTACCGAGACGAAAACCAGTCGGTGTTTAACCGAGGTCGCAAGCAAACACATTTATCCGCTCAAAGCAACGTGAGGGTGATTGAGGTGACGGGCTGCGCGGAGATATCCAGTCCACCAGACCGCGCCTGCGTCTCCATCAGCGTCaaaaacagcaaagaaaatgtCAACGACGTGACCAACAGCGTTACCCGAAGACTGGAATACATATTGCAGACCGCCAGACAGCACGACGTCAAGGTGATCAGTTATTAAAATGTGCCTTTCTAAAGCAGCAAGATATCAAGCAATTACAAAAGTTTATTTCCAAACAGGAAGAAAACATCACCGTTACCAAGCATTTACAAAGAGATGAGGATCTCTTCCACATGCAGGCTGAGGTGCTTGTGGTGTTTTTAGACTTTGAGAAGATGCAGCAAGCGCGCACAGTTTTGATTGAGAAACTggacaaaagtgtgtgtgttggtgACCCTTACTACAGTCACAGTGCTGAAAGCCTCAGTTTGTTAAGACGACGTGTGTGTTTGGAAGCGGTGGACAATGCCCGACTAAAAGCCAGCGAGGCGTGCTGTATTCTGGGCCAGGCTCTGGGACGTCCGCTGTTGGTCCGTGAGGAGGAATCTCGAGAGTGGAGCAGCAGTCAGCAGGATGCCTCTGGCTCTCCTCTAACACTACACCCCAGGACTGATGCTACGCTAATCTCTGCCACTTCACGCATGTTTGTCACCTTTGAACTGCGACCTAAGGACAATAACAGGAGGAAGTTTTAGTTTGttcaacaataatataattactacACATTTTTATGTATGTTAACGCCTATAAAGAACCACTGATATTCAGAAAAGAGTCCACAGTGAAGATAACACTATTTACTCCCATTGTTGTCGTAATGAAAAACAACTATACTGATGAATAGCACTGTGTGCAGCTTTAATGAACATGTTATTCAAATAATCAGTGTTTACTTATTAGCTGGCATTTTCCATTTATTGACACTAACGAAATGTATCATTGGACCTCAACTTTGgataataaaaagtttaac
>TCONS_00043215
AAGAAAACATCACCGTTACCAAGCATTTACAAAGAGATGAGGATCTCTTCCACATGCAGGCTGAGGTATGAAGTATCGATGCTATTTATTTGATCCTGTATAACGGAGTTATATTACATTTCATCTATAATGATGTGTTTTTTGTATGTGCAGGTGCTTGTGGTGTTTTTAGACTTTGAGAAGATGCAGCAAGCGCGCACAGTTTTGATTGAGAAACTggacaaaagtgtgtgtgttggtgACCCTTACTACAGTCACAGTGCTGAAAGCCTCAGTTTGTTAAGACGACGTGTGTGTTTGGAAGCGGTGGACAATGCCCGACTAAAAGCCAGCGAGGCGTGCTGTATTCTGGGCCAGGCTCTGGGACGTCCGCTGTTGGTCCGTGAGGAGGAATCTCGAGAGTGGAGCAGCAGTCAGCAGGATGCCTCTGGCTCTCCTCTAACACTACACCCCAGGACTGATGCTACGCTAATCTCTGCCACTTCACGCATGTTTGTCACCTTTGAACTGCGACCTAAGGACAATAACAGGAGGAAGTTTTAGTTTGttcaacaataatataattactacACATTTTTATGTATGTTAACGCCTATAAAGAACCACTGATATTCAGAAAAGAGTCCACAGTGAAGATAACACTATTTACTCCCATTGTTGTCGTAA

Function

symbol description
irak1bp1 Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within immune response. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human IRAK1BP1 (interleukin 1 receptor associated kinase 1 binding protein 1).

GO:

id name namespace
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process
GO:0006955 immune response biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-272 Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within immune response. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human IRAK1BP1 (interleukin 1 receptor associated kinase 1 binding protein 1).

Ensembl:

ensembl_id ENSDARG00000036903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043213 False 1063 mRNA 0.46 4 31245395 31248952
TCONS_00043214 False 1094 lncRNA 0.45 3 31245431 31248945
TCONS_00043215 True 666 lncRNA 0.44 2 31245792 31248790

Neighbor

gene id symbol gene type direction distance location
XLOC_021786 tbx18 coding upstream 127024 31107685 ~ 31118371 (+)
XLOC_021785 NA coding upstream 159444 31078564 ~ 31085951 (+)
XLOC_021784 selenoi coding upstream 222977 31000243 ~ 31022418 (+)
XLOC_021783 si:ch211-197l9.2 coding upstream 248639 30985530 ~ 30996756 (+)
XLOC_021781 si:ch211-197l9.2 coding upstream 263957 30967686 ~ 30981438 (+)
XLOC_021788 sh3bgrl2 coding downstream 156545 31405497 ~ 31423729 (+)
XLOC_021789 rps12 coding downstream 183004 31431956 ~ 31435922 (+)
XLOC_021790 CR759830.1 coding downstream 184321 31433273 ~ 31433348 (+)
XLOC_021791 CR759830.2 coding downstream 184627 31433579 ~ 31433663 (+)
XLOC_021792 tbpl1 coding downstream 347242 31596194 ~ 31605592 (+)
XLOC_021782 BX649257.1 non-coding upstream 265896 30979385 ~ 30979499 (+)
XLOC_021777 AL845357.1 non-coding upstream 472509 30764287 ~ 30772886 (+)
XLOC_021774 NA non-coding upstream 812010 30402314 ~ 30433385 (+)
XLOC_021767 NA non-coding upstream 1398516 29840859 ~ 29846879 (+)
XLOC_021793 BX927365.3 non-coding downstream 418477 31667429 ~ 31667543 (+)
XLOC_021795 NA non-coding downstream 614787 31863739 ~ 31885913 (+)
XLOC_021805 CU041363.1 non-coding downstream 945456 32194408 ~ 32201494 (+)

Expression


Co-expression Network