G217662 (LOC106584755)


Basic Information

Item Value
gene id G217662
gene name LOC106584755
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3909945 ~ 4025905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU248003
ctatCCATTTTTTCCCCTTCATTACTATTGAATAGGCGTTTCAACGGTCTTGCTGTTATAAATGTAGTTCCTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATGAAAAGGAATACAATGAAATATAATGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGCGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTAAATCCCATATGATTCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGATCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCAAATTCAATCAgtgaaataaaagtgaaataacaaACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTATGTCAAACATCCGTCCATCATATAAGGTCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcattttTCCCCCTAAAAAACAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATGCCGGCACCGTTGAAGCGACCGCT
>TU247999
atatgtaactatCCATTTTTTCCCCTTGTTTACTATTGAATAGGCGTTTCAACAGTCTTGCTGTTATAAATGTAGTTCCTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATTGTAGCTTCTGGtcactactgtatgtattgtctTATTAAAAGGAATACAATGAAATATAATGATTAAAGATATGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAAAGCAGCGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTAAATCCCATATGATTCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGATCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCAAATTCAATCAgtgaaataaaagtgaaataacaaACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTATGTCAAACATCCGTCCATCATATAAGGTCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcattttTCCCCCTAAAAAACAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATTCCAACACCGTTGAAGCGACCGCTGAGGATCCTCAGCTCATTGCCCATGTTGGATGGGTAGAAGTTGAAGGAGACCTGGTTGGGCATGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGGAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCGACAATGGCCTCATCATTAAACAGCTCCATCACCTGCTTTACACTCCCTTCGTTACCGAACACAGGAGACCAGGTGTTGCCGTATCTCAGCTGGAACCTAAAACAGAGGAAGCTTTTCACGTTGGTTGTGTTTTGATAAGGCACATTCAGACCGAgacagcagGTAGCGTCAGAGAATATCAAGGAATTACATTTTACATTGTACTCTGGGTTAGATACGATAACACTATTGTTTGGTCATGTACTGAATATGTAATAAACACAACAA
>TU247995
ctatCCATTTTTTCCCCTTCATTACTATTGAATAGGCGTTTCAACGGTCTTGCTGTTATAAATGTAGTTCCTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATGAAAAGGAATACAATGAAATATAATGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGCGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTAAATCCCATATGATTCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGATCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCAAATTCAATCAgtgaaataaaagtgaaataacaaACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTATGTCAAACATCCGTCCATCATATAAGGTCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcatgttgaatggagaatctccattgaaagtaACTAGTCCAGGATTAGGCTTAATCTGTATCTGGGATACCATCCCAAAGAGCAAGACATACTTTTTTCCCCCTAAAAAATAGGAGTTACTGTTTCCAGTGCTGTTTCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCAACAATCCCCAGTGGGCTCCGATGGAGGAGTTTCCAGCCCCTTCCATGTCCACCAATCCCCAGTGGGCTCCGATGGAGGTGATCCCGGCACCATTGATGCGACCACTGAGCAGCCTCAGCTCATTGCCCATGTTGTCTGGGTAGAAGTTGAAGGAGACCTGGTTGGGCATGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCAACGATGGCCTCATCATTAAACAGCTCAATCTCCTGCTTTAAGCCCCCTTCACCACCAAACACAGGAGACCAGTTGCTACCGTATCTGAGCTGCAACCTAAAACAGAGGAAGCTTTTCAAGTTGGTTGTGTTTTGATAAGGCACATTCAGA
>TU248001
ctatCCATTTTTTCCCCTTCATTACTATTGAATAGGCGTTTCAACGGTCTTGCTGTTATAAATGTAGTTCCTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATGAAAAGGAATACAATGAAATATAATGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGCGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCCATTAATCAAAGATATAATTAATCCTTTAAATCCCACATGAATCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGACCCAAGCTGACAGGACTGTTTGAATATTCCTATCTGATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248003 False 833 lncRNA 0.45 3 3909945 4025905
TU247999 False 1256 lncRNA 0.42 2 3923194 3968450
TU247995 False 1272 lncRNA 0.40 3 3923311 4025905
TU248001 True 448 lncRNA 0.41 2 3924170 4025905

Neighbor

gene id symbol gene type direction distance location
LOC110507329 LOC106606059 coding downstream 184250 3719700 ~ 3725695 (-)
LOC110507312 LOC106595913 coding downstream 284845 3621822 ~ 3625100 (-)
LOC118944808 NA coding downstream 671926 3237475 ~ 3238019 (-)
LOC110506836 LOC106605978 coding downstream 747022 3152009 ~ 3162923 (-)
LOC118936609 LOC106605979 coding downstream 789834 3106571 ~ 3120111 (-)
LOC110506736 LOC106584706 coding upstream 3187 4029092 ~ 4039160 (-)
LOC110505077 ulk4 coding upstream 109401 4135306 ~ 4354126 (-)
LOC118944827 cck-l coding upstream 427586 4453491 ~ 4456931 (-)
LOC118944829 LOC106606066 coding upstream 509578 4535483 ~ 4553394 (-)
LOC110507551 LOC106606051 coding upstream 529780 4555685 ~ 4563316 (-)
G217654 NA non-coding downstream 23922 3885729 ~ 3886023 (-)
G217652 NA non-coding downstream 30557 3879149 ~ 3879388 (-)
G217543 NA non-coding downstream 65428 3844095 ~ 3844517 (-)
G217539 NA non-coding downstream 72614 3837130 ~ 3837331 (-)
G217469 NA non-coding downstream 202182 3706954 ~ 3707763 (-)
G217729 NA non-coding upstream 26025 4051930 ~ 4052145 (-)
G217733 NA non-coding upstream 32183 4058088 ~ 4058381 (-)
G217734 NA non-coding upstream 34845 4060750 ~ 4061032 (-)
G217743 NA non-coding upstream 42362 4068267 ~ 4068540 (-)
G217744 NA non-coding upstream 43216 4069121 ~ 4069340 (-)
G217459 NA other downstream 220641 3686402 ~ 3689304 (-)
G217261 NA other downstream 571365 3338186 ~ 3338580 (-)
G216902 LOC106606079 other downstream 850201 3046005 ~ 3059744 (-)
G216811 NA other downstream 1171478 2736861 ~ 2738467 (-)
G216059 NA other downstream 1784593 2124176 ~ 2125352 (-)
G218073 LOC106605488 other upstream 413191 4439096 ~ 4440437 (-)
LOC118944839 LOC106573494 other upstream 618065 4634932 ~ 4648920 (-)
G219200 NA other upstream 744445 4770350 ~ 4772051 (-)
G219290 LOC106593286 other upstream 982179 5008084 ~ 5009406 (-)

Expression


Co-expression Network