G217619


Basic Information

Item Value
gene id G217619
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3989336 ~ 3992796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU247945
TTTTATTAttagattttatttttatttcacctttatttaactaggtaggccagatgagaacaagttctcatttacaactgcgacctggccaagataaagcatagcaatgcaacacagagttacacatggaataaacaaacatacagtcaataacacaatagaaaagtctacagtgtgtgcaaacgaggtaagattagggacgtaaggcaataaataggccgtagtggtgaagtaattacaatttagcaattaaacactggagtgatagatgtgcagaagatgaatgtgcaagtagagatactagggtgcaaaggagcacaaataaataaataaaaatatgggGGTGAGATAGTTGGATGGgctttttacagatgggctatgtacaggtgcaatgatcggcaagctgctctgacagctgatggttaaagttagagagggagatatgagtctccagcttcagtgacttttgcaattcgttccagtcattggcagcagagaactggaaggaaaggcagccaaaggaggaattggcttagggggtgaccagtgaaatacacctgctggagtgtgtgctatgggtgagtgctgctatggtgaccagtgagctgagataagggggggctttacttagcaaagacttatagatgacctggagccagtgggtttggagacgaatatgaagcgagggcaagccaacgagatcatacaggtcgcagtggtgggtagtacatgggctttggtgacaaaacggatggcactgtgatagattgcatccaatttgctgagtagtgggttggaagctattttgtaaatgacatcgccaaagtcaaggatcggtaggatagtcagttttacgagggtatttttgccagaatgagtgaaggatgctttgtttacgaaataggaagccgattctagacttaattttggattggaggtgCTTAATGTGTCttaatgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccacatattctcagtcagaaccgtccagagtagtgatgctagacaggcgggcaggtgcgggcagtgatcggttgaagagcatgcatttagtttacttgcatttaagagtaaTTGGAGaaaacggaaggagagttgtatgacattgaagcttgtctggaagatagttaacacagtgtccaaaaaagggacagacgtatacagaatggtgtcgtctgcatagagatggatcagagagtcaccagcagcaagagtgacatcattgatgtatagagactgccagaggtccggacaacaggccctccgatttgacacactgaactctgagaagtagttggtgaaccacgcaaagcagtcatttgagaaactaaggcttttgagtctgccgataagaatgtggtgattgacagagtcgaaaaccttggccaggtcaatgaatacggctgaacagtattgtcttttatcgatggcagtcatgatattgtttaggaccttgagcgtggctgaggtgtacccatgaccagctcggaaaccagattgcaaagcggagaaggtacggtgggattcgaaatggtcggtgatctgtttgttaaccttaaaaggcagggtaggatagatttaagtctataacagtttgggtcaagagtgtctccccgttttgaagatggggatgaccgcggcagctgtccaatctttggggatctcagacgatatgaaatagaggttgaacaggctagtgatagaggttgcaacaattgcggcatatcattttagaaagagagggtacagattgtctagcccaactGATATGTattggtccagattttgcagcactttcagaacatcagctatctggatttggttgatggagaaatggggaggcttagggaagttgctgtggggggtgcagaacTGTTGACcgtggtagccaggtggaaagcatagccgtagaaaaatgcttatttaaattctcaattatcgtggatttattggtggtggcagtgtttcctagcctaggtgcagtgggcagctgggaggaggttctcttattctccatgaactttacagtgtcgcagaactttttggagtttgctacaggatgcaaatttctgtttgaaaaagctagccatagctttcctaactgcctgtgtatattggttcctaacttcccgaaaagttgcatatcccgggggctattcgatgctaatgcagtacgtcacaggatgtttttgtgctggtcaagggcagtcaggtctggagtgaaccatgggctatatctgttcctggtttaaATTTTTTTGAAtgaggcatgcttatttaagatggtgaggaaagcccttttaaagaataaccaggcatcctctactgacggaatgaagtcaatatccttccaggatacccgggccaggtcgattagaaaggcctgcttgctgaagtgttttagggagcgtttgacagtgatgaggggtggttgtttgaccgcagaccTATTACgaacacaggcaatgaggcagtgaagAACGGCAACGGttgaggtgtatttagagggcaggttggtcaggatgacatcTGTGAGGGGgcccgtgtttatggatttggggttgtacctgataagttcattgatcatttgtgtgagattgagggcatctagcttagattgtaaaacggctggggtgttaagcatgtcccagtttaggtcacctaacagtacgagttctgaagatagatgggaggcaatcagttcacatatggtgtccagggcacagctgggggctgaaggtggtctataacaagcggcaacggtgagagacttgtttctggaaaggggGATTTAAAGAAaatagaagctcgaattgtttgggcacagacctggatagtatgacagaactctgtaggctatctctgcagtagattgcaactccgccccctttggtagttctatcttgtcggaaaatgttatagtttgagatggaaatttcaggatttttggtggccttcctaagccaggattcagacacggctaggacatccgggttggcagagtgtgctaaaacagtgaataaaacaaacttagggaggaggcttcgaattgggtgaggcgggttgcaggagtaTGCTGAAATTGAGGTTAaaaatattacaaatatatacgaaatatatacaaagaaaaacatatatatacacgggacacgacaagacaaagacggctgactgctacgccatcttggatttttGTCCCACTCCATTGAagttccacaggccacaatcaacagcctgatcaactttatgcaaaggagatgtgatgcgctgcatgaggcaaatggtggtcacaccagatactgactggttttctaagCCACGtccctacttttttttaaggtatctgtgaccaacatatctgtatttccagttatgtgaaatcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247945 True 3431 lncRNA 0.44 2 3989336 3992796

Neighbor

gene id symbol gene type direction distance location
LOC110520766 LOC106584755 coding upstream 21071 3965458 ~ 3968265 (+)
LOC118944821 LOC106584755 coding upstream 64896 3916991 ~ 3924440 (+)
LOC118964350 NA coding upstream 79299 3898226 ~ 3910037 (+)
LOC110507394 LOC106595324 coding upstream 114471 3854447 ~ 3874865 (+)
LOC110493962 pgcp coding upstream 185612 3754666 ~ 3803724 (+)
LOC110506729 LOC106584755 coding downstream 30179 4022975 ~ 4025061 (+)
LOC110512888 ctnnb1 coding downstream 103953 4096749 ~ 4135152 (+)
LOC110510956 LOC106605488 coding downstream 389698 4382494 ~ 4448908 (+)
LOC110518117 LOC106575761 coding downstream 521527 4514323 ~ 4531079 (+)
ano10a ano10 coding downstream 658378 4651174 ~ 4697029 (+)
G217609 NA non-coding upstream 29794 3958720 ~ 3959542 (+)
G217572 NA non-coding upstream 101636 3887484 ~ 3887700 (+)
G217570 NA non-coding upstream 103289 3885820 ~ 3886047 (+)
G217569 NA non-coding upstream 112557 3876550 ~ 3876779 (+)
G217568 NA non-coding upstream 113220 3875899 ~ 3876116 (+)
G217732 NA non-coding downstream 65288 4058084 ~ 4058476 (+)
G217742 NA non-coding downstream 75463 4068259 ~ 4068489 (+)
G217761 NA non-coding downstream 97551 4090347 ~ 4091041 (+)
G217769 NA non-coding downstream 105532 4098328 ~ 4098646 (+)
G217777 NA non-coding downstream 127216 4120012 ~ 4120475 (+)
LOC110507370 LOC106606027 other upstream 260180 3725954 ~ 3733696 (+)
LOC110520752 LOC106606080 other upstream 444858 3534519 ~ 3556267 (+)
G217146 NA other upstream 507800 3480316 ~ 3481536 (+)
G216673 NA other upstream 881103 3106354 ~ 3108233 (+)
G216640 LOC106606088 other upstream 947819 3039986 ~ 3041517 (+)
G217809 LOC106593792 other downstream 149847 4142643 ~ 4143089 (+)
G217870 NA other downstream 304760 4297556 ~ 4302856 (+)
G217896 NA other downstream 458958 4451754 ~ 4452556 (+)
G218309 NA other downstream 944301 4937097 ~ 4939894 (+)
G218293 NA other downstream 952207 4945003 ~ 4961450 (+)

Expression


Co-expression Network