G219144


Basic Information

Item Value
gene id G219144
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4693974 ~ 4697023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249952
ACTTTTGTATAGATTTATTTGAGGAAAGGGATGCTGGGTTTGTTTGGTTTCAATAATGCTGTTCTGAACCATTTTTAAACACTTGGTGATATTGTGATGGCAAACTGTAGTGAGTGTAGGTACAGTATATAGCATATAAAACAAATCTTGACAGCATGTCATGTAAAAGGCACAAGCCCGCTCTGAGGGGGGTCTTCAAGAGCACATTGGACTAATAGCATAAACTTTTTAAAAAATCAATGAATTTCCACTCACATACATTCTAAGTATCACTACTTCTGATTGATAGTCATTGATTAGACTGAGTAACAATGACCATGATAGTTGCAGGCTGTGAGGAGTATTTAACATTACGTAGCATACCATGCTTCAGTATGatacagaggaggctggtaggaggagctataggaggatgggctcattgaaatgtatggaatggaatcaaacatggtgttccattaattccattccagtctTTACAACTTCTCTGTAGCATACTGAAGCATCACCATTGATAATTAGATCTTTCCTATCTCCATGTGTAGTATCACTATGGATCAGATAATACCCtggctgtgtggttctgtgtggctcagttgtaTCTCCATGTGTAGTATCACTATGGATCAGATAATACCCtggctgtgtggttctgtgtggctcagttgtaTCTCCATGTGTAGTATCACTATGGATCAGATAACACCCtggctgtgtggctcagttggtagagcatggcgcctGCAACGCCAAGGATcctgggtttgagtcctgctGGAGCCATAAATACATCATGACGCATGTCTAAGTCaatttggataaaagtgtctgcttaaTGGCATATATTATACTCTGGCAACACTATGTAAACGTTTCAAGGATCTCACTGCTAGAGCACATAATTATGCCAGAATTCCTAAGACTTCCATTTTGAAAGCAGTTCTACTTAGATAACGTCTCTGACAGACCTAGTGATACTGGATGGAGCCCTACCCCATAACTGACTATAGTGGCTTTTAAGCAAAGCTGTTGGTCTAAAACTATTGTCTAATGTGAAAACCTATTTTTGAAAAGTAATTCATGTCATCTGTTGGTGGAATACTGTCTGGATATAATTACCATAGGCCATCTATCTCAAACTGAACCACCTCCACCAATTCCATAATGGCCATATGAACATGAAAAGTCTATGTAATACAGCATACTACCCTCAACCGCATCCATACACCTTCAATGACCTATTATCTAACACCTTAACCAGGGCCTGACATTCAGGGCTGCCCGCTGGCCCGGGTAGGTTTTGGAAACCCTCCGGGACAGTTGATGAAAATAATTATTGTAAAAATGCTATATTTAATCTAGGCTATATAATAAAGAATTCCTGAAGCTGTGAGTTCGTTATGTTGATTATTTATCATACGCGCACCATAAACTACACATTAAGCCTAGCTGGAGATTGTTGTGTGGAGCAGCTCACTGAAGACCGACAGCGGTAGGGAACATCTTCAAAGTTCTGATAAATACCAATAAATGTTAAGGCAAGTATAGGTATGCAAACCTGCAATAAAACGTTCCGTCTTGGTAGAATATTTGCTTTGCGCAATTGTCATCATAGAATAGCCTAACTTGATGATCGGACATTTCTTCGAGGCTATTTGGTCCTAGAAAAGTAATTGAAGGTAGCCGATTTAGAAGTTGCACTGCAATATAATTATTCCTTGATTGAATTTATTTCTGATCAGTTTTTATGAGATCTATCCGCTTTCATTTGTTTCCCGCGCAGGTCTGTTGCCATCTTTACCGTAAAACCACGTGCAGTGATTATGAGCAAGACAACCAGTGGAATGTTGGTTTTCCATACACATCGTTCCGTTACAAAGGGAACCCGGTTTTTACTCACTTTGTTTTAAAACATGATACAATAAGCCCTCAACATTTCAAATGGTGAGACTGACTATCTGCCACAGACATCATTAGTGTGTTGGGAGCATCTACATACAGTCTATTAGTCAGGCAATGTCCACTTTATTCTGACAGGTTTTAGAATGTAAAATATGTTTATGTCATTTGGAAGGCTTAATTAAACATGCATTATTCTCTAAGTTGTTATGCATACTTTTCTGCTTACTAATTTTGGGGGGATTTTTTTTCGATAGGTTATGACAACAATTCAATATAAAATGCAAGTCCTTCAAAATTACAATTAATTGCTTGAAAAATCATTGAATTTGACTTCCCAATGTCTGTATGAATCCTGTAGGCTACTTGCTCAGCCCAAATGAAAGATAAAATCCCTAGCTGTTGAATTTATGCGTGCATCATTCACTTGCCTGCCAGATGTTGACTGGTGCCAGTATTTCTTCCATTCGGTCTAGTCTAGTGTGCCATTGCAAATTGACCTGAATGTCAAGCCCTGCCTTAACATTACATTTGGTACGTAGCAATGCATTTCCAACAGTGGTTTCCGGAGGACATTAACATAAAGTCTTGTTCTCCGGTCAGATCTGAATCTTTAGTTTAGAGGCTGGTCTTCATGATTGTTTTAATCACATCCAGTAATGTTGTATAGACATCTGCAGGTAATACACTACACTCagcaaaacaaacagaaatacctgGCAACAGTGCAGAGGTTAAGAGCATAAAGCCAGGTTTAACAACCaaccttttatatatatataaaaagaaaaTTACTTTGGGATATTTTATGCATAAATGAGCTAATTGAGGTGTTGTAAAGAAAACAGTCTATGTGAATCTTTCTCCTTTGGAAGGGCATGTTCCATCTGGAGTTTAGCCCATCTTCGTCTTGTCAGTATCTGAACGAtcggcctcttctctcctcatcaCTTATCAGTCTTTGGGATCCCCGA
>TU249953
ACTTTTGTATAGATTTATTTGAGGAAAGGGATGCTGGGTTTGTTTGGTTTCAATAATGCTGTTCTGAACCATTTTTAAACACTTGGTGATATTGTGATGGCAAACTGTAGTGAGTGTAGGTACAGTATATAGCATATAAAACAAATCTTGACAGCATGTCATGTAAAAGGCACAAGCCCGCTCTGAGGGGGGTCTTCAAGAGCACATTGGACTAATAGCATAAACTTTTTAAAAAATCAATGAATTTCCACTCACATACATTCTAAGTATCACTACTTCTGATTGATAGTCATTGATTAGACTGAGTAACAATGACCATGATAGTTGCAGGCTGTGAGGAGTATTTAACATTACGTAGCATACCATGCTTCAGTATGatacagaggaggctggtaggaggagctataggaggatgggctcattgaaatgtatggaatggaatcaaacatggtgttccattaattccattccagtctTTACAACTTCTCTGTAGCATACTGAAGCATCACCATTGATAATTAGATCTTTCCTATCTCCATGTGTAGTATCACTATGGATCAGATAATACCCtggctgtgtggttctgtgtggctcagttgtaTCTCCATGTGTAGTATCACTATGGATCAGATAACACCCtggctgtgtggctcagttggtagagcatggcgcctGCAACGCCAAGGATcctgggtttgagtcctgctGGAGCCATAAATACATCATGACGCATGTCTAAGTCaatttggataaaagtgtctgcttaaTGGCATATATTATACTCTGGCAACACTATGTAAACGTTTCAAGGATCTCACTGCTAGAGCACATAATTATGCCAGAATTCCTAAGACTTCCATTTTGAAAGCAGTTCTACTTAGATAACGTCTCTGACAGACCTAGTGATACTGGATGGAGCCCTACCCCATAACTGACTATAGTGGCTTTTAAGCAAAGCTGTTGGTCTAAAACTATTGTCTAATGTGAAAACCTATTTTTGAAAAGTAATTCATGTCATCTGTTGGTGGAATACTGTCTGGATATAATTACCATAGGCCATCTATCTCAAACTGAACCACCTCCACCAATTCCATAATGGCCATATGAACATGAAAAGTCTATGTAATACAGCATACTACCCTCAACCGCATCCATACACCTTCAATGACCTATTATCTAACACCTTAACCAGGGCCTGACATTCAGGGCTGCCCGCTGGCCCGGGTAGGTTTTGGAAACCCTCCGGGACAGTTGATGAAAATAATTATTGTAAAAATGCTATATTTAATCTAGGCTATATAATAAAGAATTCCTGAAGCTGTGAGTTCGTTATGTTGATTATTTATCATACGCGCACCATAAACTACACATTAAGCCTAGCTGGAGATTGTTGTGTGGAGCAGCTCACTGAAGACCGACAGCGGTAGGGAACATCTTCAAAGTTCTGATAAATACCAATAAATGTTAAGGCAAGTATAGGTATGCAAACCTGCAATAAAACGTTCCGTCTTGGTAGAATATTTGCTTTGCGCAATTGTCATCATAGAATAGCCTAACTTGATGATCGGACATTTCTTCGAGGCTATTTGGTCCTAGAAAAGTAATTGAAGGTAGCCGATTTAGAAGTTGCACTGCAATATAATTATTCCTTGATTGAATTTATTTCTGATCAGTTTTTATGAGATCTATCCGCTTTCATTTGTTTCCCGCGCAGGTCTGTTGCCATCTTTACCGTAAAACCACGTGCAGTGATTATGAGCAAGACAACCAGTGGAATGTTGGTTTTCCATACACATCGTTCCGTTACAAAGGGAACCCGGTTTTTACTCACTTTGTTTTAAAACATGATACAATAAGCCCTCAACATTTCAAATGGTGAGACTGACTATCTGCCACAGACATCATTAGTGTGTTGGGAGCATCTACATACAGTCTATTAGTCAGGCAATGTCCACTTTATTCTGACAGGTTTTAGAATGTAAAATATGTTTATGTCATTTGGAAGGCTTAATTAAACATGCATTATTCTCTAAGTTGTTATGCATACTTTTCTGCTTACTAATTTTGGGGGGATTTTTTTTCGATAGGTTATGACAACAATTCAATATAAAATGCAAGTCCTTCAAAATTACAATTAATTGCTTGAAAAATCATTGAATTTGACTTCCCAATGTCTGTATGAATCCTGTAGGCTACTTGCTCAGCCCAAATGAAAGATAAAATCCCTAGCTGTTGAATTTATGCGTGCATCATTCACTTGCCTGCCAGATGTTGACTGGTGCCAGTATTTCTTCCATTCGGTCTAGTCTAGTGTGCCATTGCAAATTGACCTGAATGTCAAGCCCTGCCTTAACATTACATTTGGTACGTAGCAATGCATTTCCAACAGTGGTTTCCGGAGGACATTAACATAAAGTCTTGTTCTCCGGTCAGATCTGAATCTTTAGTTTAGAGGCTGGTCTTCATGATTGTTTTAATCACATCCAGTAATGTTGTATAGACATCTGCAGGTAATACACTACACTCagcaaaacaaacagaaatacctgGCAACAGTGCAGAGGTTAAGAGCATAAAGCCAGGTTTAACAACCaaccttttatatatatataaaaagaaaaTTACTTTGGGATATTTTATGCATAAATGAGCTAATTGAGGTGTTGTAAAGAAAACAGTCTATGTGAATCTTTCTCCTTTGGAAGGGCATGTTCCATCTGGAGTTTAGCCCATCTTCGTCTTGTCAGTATCTGAACGAtcggcctcttctctcctcatcaCTTATCAGTCTTTGGGATCCCCGA

Function

NR:

description
ragulator complex protein LAMTOR3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249952 False 2873 lncRNA 0.39 2 4693974 4697023
TU249953 True 2804 lncRNA 0.50 2 4693974 4697023

Neighbor

gene id symbol gene type direction distance location
LOC118944839 LOC106573494 coding downstream 45054 4634932 ~ 4648920 (-)
LOC118944831 NA coding downstream 98761 4567017 ~ 4595235 (-)
LOC110507551 LOC106606051 coding downstream 130658 4555685 ~ 4563316 (-)
LOC118944829 LOC106606066 coding downstream 140580 4535483 ~ 4553394 (-)
LOC118944827 cck-l coding downstream 237043 4453491 ~ 4456931 (-)
LOC110507598 snrk coding upstream 7516 4704539 ~ 4763137 (-)
LOC110507662 NA coding upstream 60524 4757547 ~ 4758783 (-)
plekho1b LOC106606096 coding upstream 155680 4852703 ~ 4892517 (-)
LOC110518085 LOC106593045 coding upstream 240406 4937429 ~ 4943500 (-)
LOC118944848 NA coding upstream 310308 5006952 ~ 5007885 (-)
G219153 NA non-coding downstream 24630 4668757 ~ 4669344 (-)
G219109 NA non-coding downstream 124143 4569421 ~ 4569831 (-)
G219085 NA non-coding downstream 179317 4514354 ~ 4514657 (-)
G218083 NA non-coding downstream 201234 4492501 ~ 4492740 (-)
G219201 NA non-coding upstream 72139 4769162 ~ 4770253 (-)
G219208 NA non-coding upstream 81984 4779007 ~ 4837111 (-)
G219236 NA non-coding upstream 201600 4898623 ~ 4898848 (-)
G219273 LOC106606069 non-coding upstream 274380 4971403 ~ 4974116 (-)
G218073 LOC106605488 other downstream 253537 4439096 ~ 4440437 (-)
G217459 NA other downstream 1004670 3686402 ~ 3689304 (-)
G217261 NA other downstream 1355394 3338186 ~ 3338580 (-)
G219200 NA other upstream 73327 4770350 ~ 4772051 (-)
G219290 LOC106593286 other upstream 311061 5008084 ~ 5009406 (-)
G219500 NA other upstream 990702 5687725 ~ 5688291 (-)
G219591 NA other upstream 1051135 5748158 ~ 5748714 (-)
G219592 NA other upstream 1054701 5751724 ~ 5752094 (-)

Expression


Co-expression Network