G219273 (LOC106606069)


Basic Information

Item Value
gene id G219273
gene name LOC106606069
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4971403 ~ 4974116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250104
TAATATCATCTCTGTGTGTCCATGACTGTGACAAATGAGGTACAGTTCAGATACTTGTTAAAGAACATATTTGACATCTGCAAAATGCATTCGATATTATGTAACTCCATAAGGAATTCAACATTCCCAACATTTCTCAAGCTTGTCAACCCTTCCTCAGTACTACACTCTGACAGACACAGGCAAGAGAACATGGTAGTTCACCCAAATCACATTTGTTTATAAGTCCTTAAGATAAATAGAATACTCTATATAGCTGTAGGCCGTCATTACTAGCCTTCTAGCAATATGGCTCTAGCCTTCTCTAGCCCATAGATTAGGCTACTTTCAAGGTAAGGAAAGAATGTATGTAAAGTCATTTGAGTGCAATAAGGGATAAGGAAGAAAAAGTTGGGGGCAAATTTGTAAACCAACACCAATCTGTCAAAAAGGCATTGAACTTTTAGAAAATACTAAACAATGCATAGTAAATATTCTCAAACTGAATTAAGAATGCATTAATGTACAGTATAGCACCTTAAAATGTTTTGTGTTCAGTTGATCTGTTTAGATTTGATTTCTAACACCACAAGAACATGCCTTACGGTTGATGGAGTTTGGATCCAGTCTGTTGTGCGTCATAGTGTTCATTAAAGCAAAACATAGAACCTGTCAAGTCAAACAAGGGATCCCCACTCAGTTTCCCCACACTGATGACATAAAAAAAGGTTCAAAGGTTGACCAATTGTACTTTAACAGTATGCACTGTAATCTTCTGTGGCCATTTGCAGAGAAGACCCACAGGCTGTGTGGCCTAAGGCAACACGGCAGATGTTCTTAAGTAGGACCGAAGTATTCAACTCAGAGTTTGTGAAAGGGAAGGACTAAGAGGGGGAGACCTCCTCATGGGACCCTCCTGGCTCTCTGGCAGCGgctccatctcttctcccttttccaaGATGTTATCCTTTGTTGTGTCCATTTCTATAGGTTCCTTGTGATTCTCATCTAATGTTCCTTCTTCAATTTGCTGCTCTTCATCTACCTTCCCTTCTTTAACCTCTTGCTCCTCATCTACCCTCTCTTCTCCAGCCTCTTGCTTCTCATCTACCCTCTCTTCTCCAGCCTCTTGCTCCTCATCTACCCTCTCTTCTCCAGTCTCTTGCTTCTCATCTACCCTCTCTTTTCCAGCCTCCATGTCCTCTGTACCCCTGCTGTCTTCCTGCTCGAGCTCTGCTGGTGACTCTGGTTCCAGAACCTCAGGACCTAGCAGGGCCTCTCTGAGAGTACTCATCAGCTCTGACTGGGTCTCTGCCAGAGTCTTGGTCATTTCCTGGTCCCGCTGCCCAGGGACCAAGTCAGTAAGGTGGAAGGACTGTCGCAGCAGATCAGGCTGTTCCTCTAGGTAGGACAAGGCCTCCACTAGCCAGGCCACTAGCAGCTGCACTAGGTCTTTGTGTGTGGCCCCTGCTGCCCCACCCTCGGCAGCCAGCCGGGCCCAGCGGGCCAGCAAAAAGCTCTGCAGCACGGGCCGCAGGCACATCTCCAGGGGCTGGAGGCGGCAGGTGCAGCCAGCAGGGACCACAGCCGGAAGGGTGCCAGTGGCACCAAGGGTGGTCAAGAAGTCCTTAGACACGTGTCCACGGTGGCCGTCCAGGATCAGCATGCCTTTGGTACTCCTGTTCTGGTCCAGCATATGTTGGCGCCACACCCGAGACTCCCACAGTGCCAACTCCTCGTCCCTGGTGAATCCCTCCACCTTGGCCTCCagcaggacagagtttgggaggCCTGTGCCCTGCATCTTGGGGAGCTGCCCCTTGATTAGGACCAGGGTGCGTAGCATGGTGCCATCGGCCAGCGCTGAAAGATAGATGGTGACCAGAGGTTCCCTGGTTCCCACCAGCTGGAGAGCCTCTTCTTTATCCACTTTGGCTGGATCCGCAAGCGCCTCAATGTCTACAAAGACAGACAGCTCGTCCATGGCAGCTATGCCTGTGTGGGGCAGATCGTGGGCCTGGATGTGCTTGCGGGTGAACTTGGTGAAGGAGTTAGCGTTGTCCTCCATGGAGCGTGGCAGGCGGCAGTTGACCGTGGCAGTCCGCCCAACAGCCTGCCAGCCAAGGCTATGTTGCAGCATGAAGCTCACAGCCCAGTCGTAAGAGATGCGGAAGGCGCTGCTGTGACCGTCCTGGCTGTGGATCTCAGAAGCCCTCTGAAAAAGGTTCTTCTCGTTGAGCGGCAGCTGCTGCTCTCGCTGGGCCATGACCCACTCCACCATGCGCTCCACCGCCTCTCCCTTGCCGGGTCCCCGGCCATCACGTTCCAGCTGCTTCTCCTTGTTCTTCAGCCAGGTCCGGATGAGATTAGACTGGGTGGATAGCTGCTTGGCGGCTTGACGTTCCCCGCAGCACAGAGCGAACAGCACTATCCTCAGCAGACGCACAGAGAGGGTGTCCTCTCGTTCTTTTACCACCGGGCGTACTGTCGGAGGGGTGACGGGAGGGTCAGATACGGCAGGCTGCTGTTTAGACTCCCCTTCATTAACAATTTCATCAACGTCCTTGCCAAGACCTTCAACCTCCATTTCTTCATTGTCTGTGTCTGAGCCCATGTCCTCCACTGGGGCCATTGCCTCGTCCAGGTCACTCTCCGGCCCTAAGGGACCCCACTCGCTGCTGTCGTCAAAGCGGTCTGCTCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250104 True 2681 lncRNA 0.45 2 4971403 4974116

Neighbor

gene id symbol gene type direction distance location
LOC110518085 LOC106593045 coding downstream 27903 4937429 ~ 4943500 (-)
plekho1b LOC106606096 coding downstream 78886 4852703 ~ 4892517 (-)
LOC110507598 snrk coding downstream 208266 4704539 ~ 4763137 (-)
LOC110507662 NA coding downstream 212620 4757547 ~ 4758783 (-)
LOC118944839 LOC106573494 coding downstream 322483 4634932 ~ 4648920 (-)
LOC118944848 NA coding upstream 33215 5006952 ~ 5007885 (-)
LOC110507711 LOC106574107 coding upstream 68780 5042896 ~ 5054330 (-)
LOC110534068 LOC106574842 coding upstream 256224 5230340 ~ 5312338 (-)
LOC110535324 LOC106605869 coding upstream 350008 5324124 ~ 5333624 (-)
LOC110515205 ci023 coding upstream 359757 5333873 ~ 5335574 (-)
G219236 NA non-coding downstream 72555 4898623 ~ 4898848 (-)
G219208 NA non-coding downstream 134292 4779007 ~ 4837111 (-)
G219201 NA non-coding downstream 201150 4769162 ~ 4770253 (-)
G219144 NA non-coding downstream 274380 4693974 ~ 4697023 (-)
G219279 NA non-coding upstream 10033 4984149 ~ 4984514 (-)
G219283 NA non-coding upstream 15376 4989492 ~ 4990146 (-)
G219284 NA non-coding upstream 17123 4991239 ~ 4991523 (-)
G219286 NA non-coding upstream 18803 4992919 ~ 4993607 (-)
G219200 NA other downstream 199352 4770350 ~ 4772051 (-)
LOC118944829 LOC106606066 other downstream 430962 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 530966 4439096 ~ 4440437 (-)
G217459 NA other downstream 1282099 3686402 ~ 3689304 (-)
G219290 LOC106593286 other upstream 33968 5008084 ~ 5009406 (-)
G219500 NA other upstream 713609 5687725 ~ 5688291 (-)
G219591 NA other upstream 774042 5748158 ~ 5748714 (-)
G219592 NA other upstream 777608 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 1355486 6329602 ~ 6349701 (-)

Expression


Co-expression Network