G219296


Basic Information

Item Value
gene id G219296
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5011333 ~ 5016077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250130
CCCAGCCACTCCCTGGTCAGGCACGTTCATGAAAGCGGTGTCTGCCTGGCTCTGGTTGTTGGAGTGGTTGTTGGTCTGCCGGGACCTCTGTTGTCGGGGTAGTGTAGGCTGCTCCATACTGGACTGCCGGCGGAGCAGAGAGACCCTGGACGAGGGTGGCCCACCCCGCTGACCACCACCCCGCTGACCACCACCCCCACCTCGGCCTCTGCCCCTGGGGGCGCCTTGTGACTGCTGTCCTGAGCCTGGAGTCTGGTTTCCCATGTAGCGACTTTTCCTGTTGTCCCTGCGGGTCGGTCTGGAGTTCTTTGGGAGCCCGGGTCCGATGGTGACTATGAGGACCTTGCTGCTGGGCTTCACAACCGCCTCTTCTCCTTGGCCCGCCTGGAACTGGATCTGCCTGGAGCCAGCAGCAGAGAACGGCCCCCAACCTCCCTTCTTCACCTTAAACTCCAGTAGGTTGTTGAACTTGAGCGGTAGCTTCCTCTGGGTCTTCTCATCATAACGTTTGTAGAGCAGACTGAGGAACTCCGTCTTGAAGATGCACTGAAGGACACTGTCGTAATGCTCCTCGTGGATGATGAAGAAGTCATCCTGCAGGGTgctgagagagactgactgaatcTTCTCCACTTCTATCTGTCTCTTCAGAACCTCGTGGATCTGTCCCTTATCTGGTCCCTGCTTCACCTTCTCCCGACCAATCAGATACAGGAACTTAGGGGTCAGGATGAGGTCACGCTTCACAGTCCTAAACCTGCGGTCATATTTGGCAACCACATCTGCAAAATCGATCTTCTCCCGGCGGCCCACGAACTGCCGGATCTCGGGGTGGTTGTCGGTGCCGATGTAGTCGCCCACAAAGTTCCTGTTgaggctgttcctcctcctctccttcttatTCAGTAGGATGTCTGAGGCTACAGGACACGACACAGTGTGATACAGTACTGAACTGACAGGACACAGTGTGATACAGTACTGAACTGACAGGATACAGGGCTtaacatatacagtagatatagtgcactattatacAGTACTGACCTGACAGGATACAGGGCTtaacatatacagtagatatagtgcactattatacAGTACTGAACTGACAGGATACAGGGCTtaacatatacagtagatatagtgcactattatacAGTACTGACCTGACAGGATACAGGGCTtaacatatacagtagatatagtgcactattatacAGTACTGACCTGACAGGATACAGGGCTtaacatatacagtagatatagtgcactattatacAGTACTGAACTGACAGGATACAGGGCTtaacatatacagtagatatagtgcactattatacAGTACTGACCTGACAGGATACAGGGCTtaacatatacagtagatatag
>TU250132
CCCAGCCACTCCCTGGTCAGGCACGTTCATGAAAGCGGTGTCTGCCTGGCTCTGGTTGTTGGAGTGGTTGTTGGTCTGCCGGGACCTCTGTTGTCGGGGTAGTGTAGGCTGCTCCATACTGGACTGCCGGCGGAGCAGAGAGACCCTGGACGAGGGTGGCCCACCCCGCTGACCACCACCCCGCTGACCACCACCCCCACCTCGGCCTCTGCCCCTGGGGGCGCCTTGTGACTGCTGTCCTGAGCCTGGAGTCTGGTTTCCCATGTAGCGACTTTTCCTGTTGTCCCTGCGGGTCGGTCTGGAGTTCTTTGGGAGCCCGGGTCCGATGGTGACTATGAGGACCTTGCTGCTGGGCTTCACAACCGCCTCTTCTCCTTGGCCCGCCTGGAACTGGATCTGCCTGGAGCCAGCAGCAGAGAACGGCCCCCAACCTCCCTTCTTCACCTTAAACTCCAGTAGGTTGTTGAACTTGAGCGGTAGCTTCCTCTGGGTCTTCTCATCATAACGTTTGTAGAGCAGACTGAGGAACTCCGTCTTGAAGATGCACTGAAGGACACTGTCGTAATGCTCCTCGTGGATGATGAAGAAGTCATCCTGCAGGGTgctgagagagactgactgaatcTTCTCCACTTCTATCTGTCTCTTCAGAACCTCGTGGATCTGTCCCTTATCTGGTCCCTGCTTCACCTTCTCCCGACCAATCAGATACAGGAACTTAGGGGTCAGGATGAGGTCACGCTTCACAGTCCTAAACCTGCGGTCATATTTGGCAACCACATCTGCAAAATCGATCTTCTCCCGGCGGCCCACGAACTGCCGGATCTCGGGGTGGTTGTCGGTGCCGATGTAGTCGCCCACAAAGTTCCTGTTgaggctgttcctcctcctctccttcttatTCAGTAGGATGTCTGAGGCTACAGGACACGACACAGTGTGATACAGTACTGAACTGACACGACACAGTGTGACACAGTACTGAACTGACACGACACAGTGTGATACAGTACTGAACTGACACGACACGACACAGTGTGACACAGTACTGAACTGACACAGTGTGACACAGTACTGAACTGACACGACACAGTGTGACACAGTGCTGAACTGACAGGACACAGTGTGACACAGTACTGAACTGACAGGACACAGTGTGAC
>TU250131
CCCAGCCACTCCCTGGTCAGGCACGTTCATGAAAGCGGTGTCTGCCTGGCTCTGGTTGTTGGAGTGGTTGTTGGTCTGCCGGGACCTCTGTTGTCGGGGTAGTGTAGGCTGCTCCATACTGGACTGCCGGCGGAGCAGAGAGACCCTGGACGAGGGTGGCCCACCCCGCTGACCACCACCCCGCTGACCACCACCCCCACCTCGGCCTCTGCCCCTGGGGGCGCCTTGTGACTGCTGTCCTGAGCCTGGAGTCTGGTTTCCCATGTAGCGACTTTTCCTGTTGTCCCTGCGGGTCGGTCTGGAGTTCTTTGGGAGCCCGGGTCCGATGGTGACTATGAGGACCTTGCTGCTGGGCTTCACAACCGCCTCTTCTCCTTGGCCCGCCTGGAACTGGATCTGCCTGGAGCCAGCAGCAGAGAACGGCCCCCAACCTCCCTTCTTCACCTTAAACTCCAGTAGGTTGTTGAACTTGAGCGGTAGCTTCCTCTGGGTCTTCTCATCATAACGTTTGTAGAGCAGACTGAGGAACTCCGTCTTGAAGATGCACTGAAGGACACTGTCGTAATGCTCCTCGTGGATGATGAAGAAGTCATCCTGCAGGGTgctgagagagactgactgaatcTTCTCCACTTCTATCTGTCTCTTCAGAACCTCGTGGATCTGTCCCTTATCTGGTCCCTGCTTCACCTTCTCCCGACCAATCAGATACAGGAACTTAGGGGTCAGGATGAGGTCACGCTTCACAGTCtgcaagatggagagagggatattATATAACTTGTTGCTATTATAGGCTTACTGACCAGGAACCACAATATATAGGGGGTTCATTGAG

Function

NR:

description
PREDICTED: unconventional myosin-Ie-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU250130 False 1391 lncRNA 0.46 7 5011333 5016077
TU250132 False 1161 lncRNA 0.55 6 5013488 5016077
TU250131 True 838 lncRNA 0.56 5 5014041 5016077

Neighbor

gene id symbol gene type direction distance location
LOC118944848 NA coding downstream 3448 5006952 ~ 5007885 (-)
LOC110518085 LOC106593045 coding downstream 67833 4937429 ~ 4943500 (-)
plekho1b LOC106606096 coding downstream 118816 4852703 ~ 4892517 (-)
LOC110507598 snrk coding downstream 248196 4704539 ~ 4763137 (-)
LOC110507662 NA coding downstream 252550 4757547 ~ 4758783 (-)
LOC110507711 LOC106574107 coding upstream 26819 5042896 ~ 5054330 (-)
LOC110534068 LOC106574842 coding upstream 214263 5230340 ~ 5312338 (-)
LOC110535324 LOC106605869 coding upstream 308047 5324124 ~ 5333624 (-)
LOC110515205 ci023 coding upstream 317796 5333873 ~ 5335574 (-)
LOC110535340 LOC106574784 coding upstream 336063 5352140 ~ 5355536 (-)
G219286 NA non-coding downstream 17726 4992919 ~ 4993607 (-)
G219284 NA non-coding downstream 19810 4991239 ~ 4991523 (-)
G219283 NA non-coding downstream 21187 4989492 ~ 4990146 (-)
G219279 NA non-coding downstream 26819 4984149 ~ 4984514 (-)
G219278 LOC106606056 non-coding upstream 8347 5024424 ~ 5025192 (-)
G219276 NA non-coding upstream 9333 5025410 ~ 5026681 (-)
G219305 NA non-coding upstream 11460 5027537 ~ 5028024 (-)
G219307 NA non-coding upstream 13641 5029718 ~ 5029968 (-)
G219309 NA non-coding upstream 21040 5037117 ~ 5039155 (-)
G219290 LOC106593286 other downstream 1927 5008084 ~ 5009406 (-)
G219200 NA other downstream 239282 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 362530 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 470892 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 570896 4439096 ~ 4440437 (-)
G219500 NA other upstream 671648 5687725 ~ 5688291 (-)
G219591 NA other upstream 732081 5748158 ~ 5748714 (-)
G219592 NA other upstream 735647 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 1313525 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 1316891 6332968 ~ 6338813 (-)

Expression


Co-expression Network