G219278 (LOC106606056)


Basic Information

Item Value
gene id G219278
gene name LOC106606056
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5024424 ~ 5025192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250109
GGGTGTCACTAACGTAAAGCACGGGTGTCACCAACGTAAAGCACGGGTGTCACTAACGTAAAGCATGGGTGTCACTAACGTAAAGCACGGGTGTCACTAACGTAAAGCACGGGTGTCACCAACGTAAAGCACGGGTGTCACTAATATTTTCAATGCATTTCCATCATCTCCAATATGATTGCCAGTGATTTGTTTACTCCTCTGGATTGGGAACAGTGTGCCTCCCAGTCCTCGTCCCAGCGGATCAATGTTGTGCCGAGCTCAACACCCTGCACAGTCACAAACAATCTGTACTGACTGGTCTGAATCCTGTTGCGAGAACTCTGGCCATCCAGCTGTTATACAGGTTAGTGAGCTTGGGTGCTCCGCTGACCACCAGGAGTGTGAGTGACATCAGAGTCCCCCTGCGTTCTCCTCTTCGCTGGCCATCTTGCTGAACTTCTCCGTCAGAGCTTCAGCGCTGATCTTGGGCAGTCCGTTGTCAAGGGGACAGCCCTCCACCAGACTGTTCATAGGGGTGGGGGGGAAGTAGGAGTCCTCCTCTATCCCAGCGTCCTCAGTGCACGCTCGTTGCTGTGGTACCTCGTAACTCTCCTCTAGGGTCCCACAATGCACCTCTCTTCGCTCCCTGTCCCTCAGGAAGTCCTTGATGATGTGCAGCACCTTCTTCCTGGAGGCCAACGTGTTGCCCTGGAGGTAAGCCCTGATGTCCGAGTAAGGGCTGCTCATTGGACTCAGGCTCAGACTGGGGCTCCGGGCTTGCTCCAAG

Function

NR:

description
PREDICTED: protein prune homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250109 True 769 lncRNA 0.54 1 5024424 5025192

Neighbor

gene id symbol gene type direction distance location
LOC118944848 NA coding downstream 16539 5006952 ~ 5007885 (-)
LOC110518085 LOC106593045 coding downstream 80924 4937429 ~ 4943500 (-)
plekho1b LOC106606096 coding downstream 131907 4852703 ~ 4892517 (-)
LOC110507598 snrk coding downstream 261287 4704539 ~ 4763137 (-)
LOC110507711 LOC106574107 coding upstream 17704 5042896 ~ 5054330 (-)
LOC110534068 LOC106574842 coding upstream 205148 5230340 ~ 5312338 (-)
LOC110535324 LOC106605869 coding upstream 298932 5324124 ~ 5333624 (-)
LOC110515205 ci023 coding upstream 308681 5333873 ~ 5335574 (-)
LOC110535340 LOC106574784 coding upstream 326948 5352140 ~ 5355536 (-)
G219296 NA non-coding downstream 8347 5011333 ~ 5016077 (-)
G219286 NA non-coding downstream 30817 4992919 ~ 4993607 (-)
G219284 NA non-coding downstream 32901 4991239 ~ 4991523 (-)
G219283 NA non-coding downstream 34278 4989492 ~ 4990146 (-)
G219276 NA non-coding upstream 218 5025410 ~ 5026681 (-)
G219305 NA non-coding upstream 2345 5027537 ~ 5028024 (-)
G219307 NA non-coding upstream 4526 5029718 ~ 5029968 (-)
G219309 NA non-coding upstream 11925 5037117 ~ 5039155 (-)
G219310 NA non-coding upstream 16213 5041405 ~ 5041618 (-)
G219290 LOC106593286 other downstream 15018 5008084 ~ 5009406 (-)
G219200 NA other downstream 252373 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 375621 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 483983 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 583987 4439096 ~ 4440437 (-)
G219500 NA other upstream 662533 5687725 ~ 5688291 (-)
G219591 NA other upstream 722966 5748158 ~ 5748714 (-)
G219592 NA other upstream 726532 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 1304410 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 1307776 6332968 ~ 6338813 (-)

Expression


Co-expression Network