G218295


Basic Information

Item Value
gene id G218295
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5359700 ~ 5410101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU248777
tgtaaagcatattttggtCTTTGAAAATAGCTCTATAAATCCCATTTATTGTTACTATGACACTACTGCTGCTCTGGACatattttatcatcattttatcatcaaaatgaaaaataacattttaaccAGCTGTTCTTGAGAATTATTGGGTATACACACTAAAGTCTATCTCTGCGTTGGCAGTATATTTTATATGGAAATCTTAAACTGAACAAAACTTTACCTCAATCTGAGCAAAAATGTGTTACGTCAGTGACGCTGAAAACGTGTGACACTCAAACCCTTCACCTagttagcagacactcttaaaataattacaaaaatgtaaatgcactgtaccagtcaaaagtttggacacacctactcattcaagggtttttatgtatttttactattttctaccttgtagaatagtgaagacatcaaaactatgaaataacaccaatggaaccatgtagtaaccaaaaaaagtgttaaacatatgactttgccttgatgacagctttgtacactcttggcattcctgtctctcttggctaagCGTTGAGGAAACACtgacttcttgtttttataagaaacattcatgtgttgtaaattccaaattgtttgcatagtcaacttacacacagcactgacacacacacacttaccccaccagacatgccaccagcaACCCTtcatggcacaacgcctctcccccatgtgacctacttgttgtgtgtatgtactgtactgacgTGTgtaatgcgcacacacacacactgttaatgtttttaaatgtactgACGTGTGtaatgcgcgcacacacacactgttaatgttttaaatgtacCGACGTGTGtaatgcgcacgcacacacactatgctaatgtttttaaatgtatgtaaattgtaaagtatttggtctgtaatgtctttttcgttGTGTCAGACCATTGacatcggctaatggggatcctaataaataacattttttattttttattaatcatTAGTCCCTGCGATGATCGTCTCATGTACTCCGTCCATTGATCTAAATAAAATATGAACACTGACGATTATTTACCATTGATGAGAACCACATGTATTTATGGATAATAATTTGGGTTAGAAATGTCCTCTTGATTCTTGCTGGTCACCTGTAAAAGATGAGAAATGTGTATTTGAGTTTGGTGTCAACATATGGTTTATTGCCGAAACCTACCGTTGTGCTTCTCTCTGTAAAATGTTACTCTTTCTTTACTCATGTATGTAGTGGTCAGAAGTTACCTCTATAATGTGATCATTGAAATGTTAAGGTGAATCTTCAGAAATGTAAATTATTACCTTCTATTCCTCGTTTATTGATGAGGGTTCTGTTAATTTCCTGTTCAGAGAATTGACGGGCAAATGAGGCACTTTCGAGCGCATGGTTTTTCATTGATGGGTAATGGCGTAGTAGCTTATCCATGAGGATGTACATtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaggaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttgtaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggcatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaac

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU248777 True 2303 lncRNA 0.38 2 5359700 5410101

Neighbor

gene id symbol gene type direction distance location
LOC110535282 LOC106574835 coding upstream 35800 5301374 ~ 5324765 (+)
zgc:153896 LOC106574856 coding upstream 41272 5313632 ~ 5318428 (+)
LOC110520779 LOC106574086 coding upstream 209236 5056537 ~ 5150464 (+)
LOC110507710 LOC106606072 coding upstream 320545 5027793 ~ 5039155 (+)
LOC110507709 LOC106574077 coding upstream 332860 5018589 ~ 5026840 (+)
LOC110534114 LOC106574714 coding downstream 29994 5440095 ~ 5454489 (+)
LOC118944859 LOC106585606 coding downstream 88443 5498544 ~ 5503473 (+)
LOC110493157 LOC106585480 coding downstream 93990 5504091 ~ 5537123 (+)
LOC118944860 NA coding downstream 109990 5520091 ~ 5520401 (+)
LOC118936615 LOC106585480 coding downstream 195676 5605777 ~ 5612122 (+)
G218441 NA non-coding upstream 10539 5347526 ~ 5349161 (+)
G218437 NA non-coding upstream 28214 5330703 ~ 5331486 (+)
G218297 LOC106605869 non-coding upstream 29142 5330316 ~ 5330558 (+)
G218298 NA non-coding upstream 29489 5328732 ~ 5330211 (+)
G218436 NA non-coding upstream 31103 5327966 ~ 5328597 (+)
G218455 NA non-coding downstream 9565 5419666 ~ 5420782 (+)
G218463 NA non-coding downstream 47251 5457352 ~ 5559071 (+)
G218465 NA non-coding downstream 49991 5460092 ~ 5561271 (+)
G218473 NA non-coding downstream 59126 5469227 ~ 5569942 (+)
G218475 LOC106585541 non-coding downstream 62764 5472865 ~ 5573071 (+)
G218301 NA other upstream 33691 5325427 ~ 5326009 (+)
G218293 NA other upstream 398250 4945003 ~ 4961450 (+)
G218309 NA other upstream 419806 4937097 ~ 4939894 (+)
G217896 NA other upstream 907144 4451754 ~ 4452556 (+)
LOC110535491 LOC106606078 other downstream 122914 5533015 ~ 5627436 (+)
G218487 NA other downstream 133829 5543930 ~ 5633481 (+)
G218558 NA other downstream 338124 5748225 ~ 5748742 (+)
LOC110508149 LOC106593364 other downstream 480425 5822391 ~ 5898142 (+)

Expression


Co-expression Network