G218465


Basic Information

Item Value
gene id G218465
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5460092 ~ 5561271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249001
GCCAATTATGTGCAGGTGCAGTGGATTGTGGCTGTCTTTCCgatagcatcttacctgcattgctctgtaccaaaacaaagttgttaaatgtaacgtaaacaagtattcttactaaaagaagctttcgtatcaaacccgacgtcccgagtcattactttgAAGTTAGTTCATCTAAAATGCACAGAGCATTTTGTTAAAGTGCCATCGCTGGCCATAGTCCCCGCAGTTAGTGTCACTGTCCACATCCAACTTACAGTGGGCTAAAAGCAGAACAAGCAGGTTTGTAAATGGGGAGGAAGATATGCAGTATGAGGTTGCAAACTGAGACTACTCATGCAGTGGGATACGAGGGAAcgtgagggagagatagaaatagAAGTTCTGTTATAAATATGGGGTTACTGATTACCATTAGAGTTTGGCTGTGGCCGGGGGGGTGAAGTGGCTCCATCTCCCCTGGAGAAGGCATGTATAGTGTCAACCTGGTCAAGAGCTATCTGAGTCGGAAATACACCAGTGTGCTCCAGGAACTCCTCCTCATCTGTgtactcctcttcctctttccacacatcccactctgcctgtccttgtCCCTGTCCGTGTTCCTGTCCCAGCATCAGATCACACTTGAGTTTGAGATGGGCAGGAGGGTAGCTGTTCCCTCCCTCTGAAATAGTGAGGGAGAAGTGAGAGAGTTAG
>TU249003
GCCAATTATGTGCAGGTGCAGTGGATTGTGGCTGTCTTTCCgatagcatcttacctgcattgctctgtaccaaaacaaagttgttaaatgtaacgtaaacaagtattcttactaaaagaagctttcgtatcaaacccgacgtcccgagtcattactttgAAGTTAGTTCATCTAAAATGCACAGAGCATTTTGTTAAAGTGCCATCGCTGGCCATAGTCCCCGCAGTTAGTGTCACTGTCCACATCCAACTTACAGTGGGCTAAAAGCAGAACAAGCAGGTTTGTAAATGGGGAGGAAGATATGCAGTATGAGGTTGCAAACTGAGACTACTCATGCAGTGGGATACGAGGGaacgtgagggagagagggaaatagaagtTCTGTTATAAATGTGGGGTTACTGATTACCATTAGAGTTTGGCTGTGGCCGGGGGGGTGAAGTGGCTCCATCTCCCCTGGAGAAGGCATGTATAGTGTCAACCTGGTCAAGAGCTATCTGAGTCGGAAATACACCAGTGTGCTCCAGGAACTCCTCCTCATCTGTgtactcctcttcctctttccacacatcccactctgcctgtccttgtCCCTGTCCGTGTTCCTGTCCCAGCATCAGATCACACTTGAGTTTGAGATGGGCAGGAGGGTAGCTGTTCCCTCCCTCTGAAATAGTGAGGGAGAAGTGAGAGAGTTAGGACACACAGTAacactgccttggcagcagctaatggggatccctaataaatacaaatgcaaaTGTTAAAATGTATGATTTGTTCTGGCATAATTATCTCTCCCTCAAGAGACAACCAGATGAAGAAGCATGCTATTGTTCCTTACTACTGAGGACCCTGAGGAAGGCCCTGAAGAAGCGCTGTGCGtagcctctctcccactccttcaCATGCCACAGATGGAGCAGGTGCTGCTCTGACGGCGTGCTCGCCAACTCCTCCACCTGAGTGCTGTTGTAATGGTCGCCCACTGCGATCACAAACAGGGAAACGCCCTGACACTTGGCCTTCTGGGAAATGTAGGCCAGCTTGGCCTGGTCCCAGTGGGCTGTCTCGGCCCCCACCACAGCCAGCACCACTCTACTCTTCCTGGGCCTGGTGGCCTTGAGGAACACCTTGCTCAGAGCGTACTCCAGGGTCTGCCCCAGAGACGACACCTTGCTCAGAGCGTACTCCAGGGTCTGCCCCAGAGACGACACTCCTCCCTGCTGCTGCATGCTCCTCAGGTGTCTCTGTAGACCAATGTGGTTGTGGTACTTCTGCAGGTCAAACTCTACCTTGACGGCCTGGGAAGTCTGGGGGAGCAGAGAACCACTGGTCTGGAGAAGGGCCACTCTGGCCCGGCCGTCAGCCACGCTGGGTTTGGGGCTCCAGGCTACCTGCTTCACCACTGAGCCCAGAAGCTCCTGGACGCCAGCGTACTGATCGGCCCGGATCTCCCTTGAACCGTCCACCACCAGGGTCAGGTCCATATCCACCACCAGGGGCCGCTGAGCGTCAGTAAAATCACACCCCTGGGCTGGTTTACAGTG
>TU249002
CTGAGGACCCTGAGGAAGGCCCTGAAGAAGCGCTGTGCGtagcctctctcccactccttcaCATGCCACAGATGGAGCAGGTGCTGCTCTGACGGCGTGCTCGCCAACTCCTCCACCTGAGTGCTGTTGTAATGGTCGCCCACTGCGATCACAAACAGGGAAACGCCCTGACACTTGGCCTTCTGGGAAATGTAGGCCAGCTTGGCCTGGTCCCAGTGGGCTGTCTCGGCCCCCACCACAGCCAGCACCACTCTACTCTTCCTGGGCCTGGTGGCCTTGAGGAACACCTTGCTCAGAGCGTACTCCAGGGTCTGCCCCAGAGACGACACTCCTCCCTGCTGCTGCATGCTCCTCAGGTGTGTCTGTAGACCAATGTGGTTGTGGTACTTCTGCAGGTCAAACTCTACCTTGACGGCCTGGGAAGTCTGGGGGAGCAGAGAACCACTGGTCTGGAGAAGGGCCACTCTGGCCCGGCCGTCAGCCACGCTGGGTTTGGGGCTCCAGGCTACCTGCTTCACCACTGAGCCCAGAAGCTCCTGGACGCCAGCGTACTGATCGGCCCGGATCTCCCTTGAACCGTCCACCACCAGGGTCAGGTCCATATCCACCACCAGGGGCCGCTGAGCGTCAGTAAAATCACACCCCTGGGCTGGTTTACAGTG

Function

NR:

description
collagen alpha-6(VI) chain-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU249001 False 699 lncRNA 0.38 2 5460092 5560462
TU249003 False 1550 TUCP 0.52 2 5460092 5561271
TU249002 True 662 lncRNA 0.61 2 5460938 5561271

Neighbor

gene id symbol gene type direction distance location
LOC110534114 LOC106574714 coding upstream 5603 5440095 ~ 5454489 (+)
LOC110535312 LOC106574762 coding upstream 88689 5367632 ~ 5371403 (+)
LOC110535282 LOC106574835 coding upstream 136192 5301374 ~ 5324765 (+)
zgc:153896 LOC106574856 coding upstream 141664 5313632 ~ 5318428 (+)
LOC110520779 LOC106574086 coding upstream 309628 5056537 ~ 5150464 (+)
LOC118936615 LOC106585480 coding downstream 44506 5605777 ~ 5612122 (+)
LOC110535491 LOC106606078 coding downstream 63984 5533015 ~ 5627436 (+)
LOC110534121 slc4a7 coding downstream 75991 5637262 ~ 5706145 (+)
LOC110535554 LOC106605965 coding downstream 168646 5729917 ~ 5733058 (+)
cklf7 cklf7 coding downstream 174535 5735806 ~ 5744817 (+)
G218294 NA non-coding upstream 3696 5356558 ~ 5456396 (+)
G218455 NA non-coding upstream 39310 5419666 ~ 5420782 (+)
G218295 NA non-coding upstream 49991 5359700 ~ 5410101 (+)
G218441 NA non-coding upstream 110931 5347526 ~ 5349161 (+)
G218437 NA non-coding upstream 128606 5330703 ~ 5331486 (+)
G218497 LOC106585480 non-coding downstream 35315 5596586 ~ 5602412 (+)
G218487 NA non-coding downstream 71125 5543930 ~ 5633481 (+)
G218534 NA non-coding downstream 122127 5683398 ~ 5683643 (+)
G218537 NA non-coding downstream 129905 5691176 ~ 5692870 (+)
G218301 NA other upstream 134083 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 438219 5018589 ~ 5026840 (+)
G218293 NA other upstream 498642 4945003 ~ 4961450 (+)
G218309 NA other upstream 520198 4937097 ~ 4939894 (+)
G217896 NA other upstream 1007536 4451754 ~ 4452556 (+)
G218558 NA other downstream 186954 5748225 ~ 5748742 (+)
LOC110508149 LOC106593364 other downstream 329255 5822391 ~ 5898142 (+)
LOC110508220 sc61b other downstream 396056 5957257 ~ 5963980 (+)
LOC110535756 stx17 other downstream 568059 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 646232 6174662 ~ 6228920 (+)

Expression


Co-expression Network