G218476 (LOC106585544)


Basic Information

Item Value
gene id G218476
gene name LOC106585544
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5474121 ~ 5574560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249040
GCTGGTTTGGCAGAATTCAAAGGCAATATTTTTCTGCAATGTATTTAGTTTATGGAAGTCATCCACAAAGAAAACCTTATTCGTGTCCTCTGCCATGAGCTCAAGCTCTTGCTTATTTGCTCCAACCACTCCGATGCTATAGACTATGATCCCATTGTCCCGTAGCTCCTTGGCTGGCCCAGCTAGGCTATTGTGGTCAGTAGCCTCACCATCTGTGATCACCATCAACCACTGGGGAACATTTAGGGCCTTTCGCCCACCGTACTGTGCACCAAAATAACCCAAGGAATACTTGAGTGCCTTTCCAGTGTAGGTGTCTCCACTGGGCTCTCTAAGCTTTGTGATGGCACTATTGACGTCTCGCTTAGATTTGTATTCGTTGAGTGTGAATTTAGACTCGGGGTTGTCTGAAAAGACAATCAGACCATAGCGTGTCTGCTTCTCCCCAACAGAGGTTTCATTGACCACGGACATCATGAAGTTTTTCATTATGTCAAAATTATCTGAGCTGATGCTGGTGGAGCCGTCCACCAAGAAAATGATGTCTGCGATCTCCGTCCTCACACACTCT

Function

NR:

description
collagen alpha-6(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249040 True 571 lncRNA 0.46 2 5474121 5574560

Neighbor

gene id symbol gene type direction distance location
LOC110534114 LOC106574714 coding upstream 19632 5440095 ~ 5454489 (+)
LOC110535312 LOC106574762 coding upstream 102718 5367632 ~ 5371403 (+)
LOC110535282 LOC106574835 coding upstream 150221 5301374 ~ 5324765 (+)
zgc:153896 LOC106574856 coding upstream 155693 5313632 ~ 5318428 (+)
LOC110520779 LOC106574086 coding upstream 323657 5056537 ~ 5150464 (+)
LOC118936615 LOC106585480 coding downstream 31217 5605777 ~ 5612122 (+)
LOC110535491 LOC106606078 coding downstream 50695 5533015 ~ 5627436 (+)
LOC110534121 slc4a7 coding downstream 62702 5637262 ~ 5706145 (+)
LOC110535554 LOC106605965 coding downstream 155357 5729917 ~ 5733058 (+)
cklf7 cklf7 coding downstream 161246 5735806 ~ 5744817 (+)
G218294 NA non-coding upstream 17725 5356558 ~ 5456396 (+)
G218455 NA non-coding upstream 53339 5419666 ~ 5420782 (+)
G218295 NA non-coding upstream 64020 5359700 ~ 5410101 (+)
G218441 NA non-coding upstream 124960 5347526 ~ 5349161 (+)
G218437 NA non-coding upstream 142635 5330703 ~ 5331486 (+)
G218497 LOC106585480 non-coding downstream 22026 5596586 ~ 5602412 (+)
G218487 NA non-coding downstream 57836 5543930 ~ 5633481 (+)
G218534 NA non-coding downstream 108838 5683398 ~ 5683643 (+)
G218537 NA non-coding downstream 116616 5691176 ~ 5692870 (+)
G218301 NA other upstream 148112 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 452248 5018589 ~ 5026840 (+)
G218293 NA other upstream 512671 4945003 ~ 4961450 (+)
G218309 NA other upstream 534227 4937097 ~ 4939894 (+)
G217896 NA other upstream 1021565 4451754 ~ 4452556 (+)
G218558 NA other downstream 173665 5748225 ~ 5748742 (+)
LOC110508149 LOC106593364 other downstream 315966 5822391 ~ 5898142 (+)
LOC110508220 sc61b other downstream 382767 5957257 ~ 5963980 (+)
LOC110535756 stx17 other downstream 554770 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 632943 6174662 ~ 6228920 (+)

Expression


Co-expression Network