G218497 (LOC106585480)


Basic Information

Item Value
gene id G218497
gene name LOC106585480
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5596586 ~ 5602412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249070
ACACACCTGGACAACAAAAACCTGTGGGATATTCACATTTCACATATGCAAAAAAGAGAAAGAAGCAGAAGCGGATGTGTACATTGTTCTGGACACCTCAGAGAGTGTGGCACTGAGGGCCAAGCCCTACGGCTCCTTTGTTGATCAGATCAAGCAGTTTGCCCTGGACTTTGTGGACCAGCTCAATACTAGATACTACAGCTGTGAGCGTAACCTGACGTGGAGTGTGGGAGTGCTGCACTACAGTGATGAGGTAAAGGTGATGAGGGAGTTGACCAGCACCAAGGAGGCCCAAGGAAGAGCTCAGCTGAAGAGAGCTATACAGGACATTCGCTACATCGGCAAGGGAACCCACACCGACTGTGCCATCTCCGTAGCAACAGGGCAGCTGATGACAGGGTGAGTCCATTGATTGTATAAGG

Function

NR:

description
collagen alpha-1(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249070 True 422 lncRNA 0.47 3 5596586 5602412

Neighbor

gene id symbol gene type direction distance location
LOC110493157 LOC106585480 coding upstream 59463 5504091 ~ 5537123 (+)
LOC118944860 NA coding upstream 76185 5520091 ~ 5520401 (+)
LOC118944859 LOC106585606 coding upstream 93113 5498544 ~ 5503473 (+)
LOC110534114 LOC106574714 coding upstream 142097 5440095 ~ 5454489 (+)
LOC110535312 LOC106574762 coding upstream 225183 5367632 ~ 5371403 (+)
LOC118936615 LOC106585480 coding downstream 3365 5605777 ~ 5612122 (+)
LOC110535491 LOC106606078 coding downstream 22843 5533015 ~ 5627436 (+)
LOC110534121 slc4a7 coding downstream 34850 5637262 ~ 5706145 (+)
LOC110535554 LOC106605965 coding downstream 127505 5729917 ~ 5733058 (+)
cklf7 cklf7 coding downstream 133394 5735806 ~ 5744817 (+)
G218476 LOC106585544 non-coding upstream 22026 5474121 ~ 5574560 (+)
G218475 LOC106585541 non-coding upstream 23515 5472865 ~ 5573071 (+)
G218473 NA non-coding upstream 26644 5469227 ~ 5569942 (+)
G218465 NA non-coding upstream 35315 5460092 ~ 5561271 (+)
G218463 NA non-coding upstream 37515 5457352 ~ 5559071 (+)
G218487 NA non-coding downstream 29984 5543930 ~ 5633481 (+)
G218534 NA non-coding downstream 80986 5683398 ~ 5683643 (+)
G218537 NA non-coding downstream 88764 5691176 ~ 5692870 (+)
G218538 NA non-coding downstream 89494 5691906 ~ 5693069 (+)
G218301 NA other upstream 270577 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 574713 5018589 ~ 5026840 (+)
G218293 NA other upstream 635136 4945003 ~ 4961450 (+)
G218309 NA other upstream 656692 4937097 ~ 4939894 (+)
G218558 NA other downstream 145813 5748225 ~ 5748742 (+)
LOC110508149 LOC106593364 other downstream 288114 5822391 ~ 5898142 (+)
LOC110508220 sc61b other downstream 354915 5957257 ~ 5963980 (+)
LOC110535756 stx17 other downstream 526918 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 605091 6174662 ~ 6228920 (+)

Expression


Co-expression Network