G219550 (LOC106585489)


Basic Information

Item Value
gene id G219550
gene name LOC106585489
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5680205 ~ 5682782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250433
GTGAGTGGCTGGCCCGCAAACATGGAGAAGGCCACGCCCGTCAGAGACGCCCCGAACAACGACTCGATCGCACTAATGTTTCCCTTGGTGGCCTCGCCCAGCAGGCCTCCGAAAGTGATGACAGGGGACATGCAGGCGCAGTAGAGGAACAGCACAGAGGCCAGGCACTGCAGGCTCAGAGCATCCCTAATATCTCCCCACAGGAACGGAGCTTTCCTCCTTACATCCATCACCAGGCCCCCAAAGatcCTCCCTGTCCTCTGTAGCTCTGGTCCTGCTTGGTGCTGGTCTTCCTTGAAGGACTCATTATGGGCAGAGCCGTTGGGCAATGAGGGCATCTTCCTCTTGTCCTGAGATGGGACACTCTTGGGGGGCTCGATTCGTATTGTAGGGTCCCACTCTCCTGGGGGTAGGACGGTCACCTGGTCCAGAAACTCATCTATCCCCGACAGCAGATCGTTCCGGTCTTTGGCCTTGTACGCTACATCATGGAAGACCTGGCACAGGACGACAACAGCAGTCTCTCAAACGACAGGTCGCTGCTTCTGACGCCACAGCATG
>TU250434
GAACAGCTCTCTTCATGTTCATAATGCTTTTATAATGAGCTGCCAAGGTGACCACTCAGTCTGGCAGCTCCTTTTCATCAAAAGGGACTTAAAGAAAAcccattgtgtgtgtttgtgtgtgagagagacccaCCTCCCTGTCCTCTGTAGCTCTGGTCCTGCTTGGTGCTGGTCTTCCTTGAAGGACTCATTATGGGCAGAGCCGTTGGGCAATGAGGGCATCTTCCTCTTGTCCTGAGATGGGACACTCTTGGGGGGCTCGATTCGTATTGTAGGGTCCCACTCTCCTGGGGGTAGGACGGTCACCTGGTCCAGAAACTCATCTATCCCCGACAGCAGATCGTTCCGGTCTTTGGCCTTGTACGCTACATCATGGAAGACCTGGCACAGGACGACAACAGCAGTCTCTCAAACGACAGGTCGCTGCTTCTGACGCCACAGCATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250433 False 561 lncRNA 0.45 4 5680205 5682782
TU250434 True 445 lncRNA 0.52 2 5680205 5680821

Neighbor

gene id symbol gene type direction distance location
LOC110513540 LOC106585541 coding downstream 90059 5557994 ~ 5590146 (-)
LOC110517595 LOC106585541 coding downstream 187682 5457526 ~ 5492523 (-)
LOC110535504 LOC106574737 coding downstream 240302 5376122 ~ 5439903 (-)
LOC110535340 LOC106574784 coding downstream 324669 5352140 ~ 5355536 (-)
LOC110515205 ci023 coding downstream 344631 5333873 ~ 5335574 (-)
LOC110533792 LOC106605966 coding upstream 40900 5723682 ~ 5725550 (-)
LOC110535565 LOC106606103 coding upstream 72278 5755060 ~ 5766123 (-)
LOC110535576 LOC106586326 coding upstream 96038 5778820 ~ 5790359 (-)
LOC110535585 LOC106586334 coding upstream 107685 5790467 ~ 5797248 (-)
LOC110490516 LOC106574265 coding upstream 114136 5796918 ~ 5799016 (-)
G219543 NA non-coding downstream 448 5669425 ~ 5679757 (-)
G219541 NA non-coding downstream 16234 5663577 ~ 5663971 (-)
G219501 LOC106606078 non-coding downstream 52685 5535168 ~ 5627520 (-)
G219499 NA non-coding downstream 58083 5527982 ~ 5622122 (-)
G219498 NA non-coding downstream 58985 5526375 ~ 5621220 (-)
G219552 NA non-coding upstream 2173 5684955 ~ 5685316 (-)
G219503 LOC106585489 non-coding upstream 5891 5688673 ~ 5689762 (-)
G219559 NA non-coding upstream 23447 5706229 ~ 5707402 (-)
G219562 NA non-coding upstream 25619 5708401 ~ 5708629 (-)
G219563 NA non-coding upstream 28503 5711285 ~ 5711547 (-)
G219290 LOC106593286 other downstream 670799 5008084 ~ 5009406 (-)
G219200 NA other downstream 908154 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 1031402 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 1139764 4535483 ~ 4553394 (-)
G218073 LOC106605488 other downstream 1239768 4439096 ~ 4440437 (-)
G219500 NA other upstream 4943 5687725 ~ 5688291 (-)
G219591 NA other upstream 65376 5748158 ~ 5748714 (-)
G219592 NA other upstream 68942 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 646820 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 650186 6332968 ~ 6338813 (-)

Expression


Co-expression Network