G218539


Basic Information

Item Value
gene id G218539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5693336 ~ 5694495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249116
gttgTAGTAGGTGTTTTAGTTAGGTCAGTTGTAGTctgtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTctgtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTCGGTGTTTTAGTTAGgtcagttgTAGTCggtgttttggttaggtcagttgTAGTCGGTGTTTTAGTTAGGTCAGTTGTAGTAGCTGATAGTTAGGTCAGTTGTAGTAgctgttttggttaggtcagttgtagtagctgttttggttaggtcagttgTAGTCGGTGTTTTTAGTTAGGTCAGTTGTAGTCggtgttttggttaggtc
>TU249117
gttgTAGTAGGTGTTTTAGTTAGGTCAGTTGTAGTctgtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTctgtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTCggtgttttggttaggtcagttgTAGTCGGTGTTTTAGTTAGgtcagttgTAGTAGCTGTTTTAGTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249116 False 403 lncRNA 0.41 2 5693336 5693844
TU249117 True 240 lncRNA 0.42 2 5693336 5694495

Neighbor

gene id symbol gene type direction distance location
LOC110535491 LOC106606078 coding upstream 65900 5533015 ~ 5627436 (+)
LOC118936615 LOC106585480 coding upstream 81214 5605777 ~ 5612122 (+)
LOC110493157 LOC106585480 coding upstream 156213 5504091 ~ 5537123 (+)
LOC118944860 NA coding upstream 172935 5520091 ~ 5520401 (+)
LOC118944859 LOC106585606 coding upstream 189863 5498544 ~ 5503473 (+)
LOC110535554 LOC106605965 coding downstream 35422 5729917 ~ 5733058 (+)
cklf7 cklf7 coding downstream 41311 5735806 ~ 5744817 (+)
trnat-ugu-30 NA coding downstream 106382 5800877 ~ 5800949 (+)
LOC110508149 LOC106593364 coding downstream 127896 5822391 ~ 5898142 (+)
LOC110508220 sc61b coding downstream 262762 5957257 ~ 5963980 (+)
G218538 NA non-coding upstream 267 5691906 ~ 5693069 (+)
G218537 NA non-coding upstream 466 5691176 ~ 5692870 (+)
G218534 NA non-coding upstream 9693 5683398 ~ 5683643 (+)
G218487 NA non-coding upstream 59855 5543930 ~ 5633481 (+)
G218486 NA non-coding upstream 64195 5538574 ~ 5629141 (+)
G218507 NA non-coding downstream 11831 5706326 ~ 5708029 (+)
G218544 NA non-coding downstream 14382 5708877 ~ 5709087 (+)
G218547 NA non-coding downstream 21154 5715649 ~ 5715874 (+)
G218551 NA non-coding downstream 32580 5727075 ~ 5727534 (+)
G218553 NA non-coding downstream 33943 5728438 ~ 5728739 (+)
G218465 NA other upstream 132065 5460092 ~ 5561271 (+)
G218301 NA other upstream 367327 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 671463 5018589 ~ 5026840 (+)
G218558 NA other downstream 53730 5748225 ~ 5748742 (+)
LOC110535756 stx17 other downstream 434835 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 513008 6174662 ~ 6228920 (+)

Expression


Co-expression Network