G219559


Basic Information

Item Value
gene id G219559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5706229 ~ 5707402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250443
ccaacactcagacatcatttacaaattaagaatttgtgtttagtgagtctgccagatcagaggcagtagggatgttctcttgataagcgtGTGAATTTAACCCTTttctgttctgctaagcattcaaaatgtagcaagtacttttgggtgtcagggaaaattgtatggagtaaaaagtacattattttctttaggaatgtagtgaagtaaaagttgtcaaaaatataactagtaaagaaaagtacagataccccaaaaaatgacttaagtaatatttaaaagtatttttacaccactggtaaGCACAAAGTCAGAAGGAACGAGAACGTAGGTCAATTTCCAACATTCATAGTATGGGGCCCATAATTGACCCAGAGGGCAAAACAGCTGCTAAAACAGATGACTGTTTGTTTTCATCAAGGTGTTCAGATGGAAGCGGTCAGTCAGTTATTGAACTTGAGGAGTCTCCTCTTTATTGAAGTCAAAACAAATTCTTGCCCCCCGTACGACTTACACCCAATGTTTCATAACCTTCATTCCATATTTGTATAACACTATAGATTTAAATAAAACTAATTCAATCACATAATTCAAACTCATGAATTAAACTCATTCACAGAGCCATGAACAGCAGACTGATGCCCTTCCCAGTAGGACTCCTGTAACAGTATACATATTGGATAATCAACCAAAAGCATTGCTATTCATTAACACTAAATCCACGGGACAAAATTAATTAAGATCTTTTTTTCTATACAAAACTGCCTACAACAGAATAGCCAATAAAAGAAGAGCACAGAGAAACCCACCTATCACAGTGTTGTCCAGTGTCAAATAGGTAAAAAGGGTTTACAGCTGAAAGGGAGGGgcagagaaacacacagcaacaTCTTCTAGCAACACAAGTGGATTGACAATGAGGGAGTCAGTCAGTGAGCAACAGAGTGAACGTgagacaacacacagagacaacagagagagacaacacagatggagagagagagacaacacagatggagagagagcgacaacacagagggagagagagacaacacagatagagaaagggagagagacaacacagagagagagagagacaacacagagagagagagagaacacagagagagagagaaaacacagagagagagagagagcgaacacagagaagggg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU250443 True 1174 lncRNA 0.39 1 5706229 5707402

Neighbor

gene id symbol gene type direction distance location
LOC110513540 LOC106585541 coding downstream 116083 5557994 ~ 5590146 (-)
LOC110517595 LOC106585541 coding downstream 213706 5457526 ~ 5492523 (-)
LOC110535504 LOC106574737 coding downstream 266326 5376122 ~ 5439903 (-)
LOC110535340 LOC106574784 coding downstream 350693 5352140 ~ 5355536 (-)
LOC110515205 ci023 coding downstream 370655 5333873 ~ 5335574 (-)
LOC110533792 LOC106605966 coding upstream 16280 5723682 ~ 5725550 (-)
LOC110535565 LOC106606103 coding upstream 47658 5755060 ~ 5766123 (-)
LOC110535576 LOC106586326 coding upstream 71418 5778820 ~ 5790359 (-)
LOC110535585 LOC106586334 coding upstream 83065 5790467 ~ 5797248 (-)
LOC110490516 LOC106574265 coding upstream 89516 5796918 ~ 5799016 (-)
G219503 LOC106585489 non-coding downstream 16467 5688673 ~ 5689762 (-)
G219552 NA non-coding downstream 20913 5684955 ~ 5685316 (-)
G219550 LOC106585489 non-coding downstream 23447 5680205 ~ 5682782 (-)
G219543 NA non-coding downstream 26472 5669425 ~ 5679757 (-)
G219541 NA non-coding downstream 42258 5663577 ~ 5663971 (-)
G219562 NA non-coding upstream 999 5708401 ~ 5708629 (-)
G219563 NA non-coding upstream 3883 5711285 ~ 5711547 (-)
G219564 NA non-coding upstream 5376 5712778 ~ 5713205 (-)
G219565 NA non-coding upstream 8120 5715522 ~ 5715742 (-)
G219566 NA non-coding upstream 8594 5715996 ~ 5716417 (-)
G219500 NA other downstream 17938 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 696823 5008084 ~ 5009406 (-)
G219200 NA other downstream 934178 4770350 ~ 4772051 (-)
LOC118944839 LOC106573494 other downstream 1057426 4634932 ~ 4648920 (-)
LOC118944829 LOC106606066 other downstream 1165788 4535483 ~ 4553394 (-)
G219591 NA other upstream 40756 5748158 ~ 5748714 (-)
G219592 NA other upstream 44322 5751724 ~ 5752094 (-)
LOC110534138 LOC106605946 other upstream 622200 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 625566 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 779098 6479543 ~ 6491729 (-)

Expression


Co-expression Network