G218530


Basic Information

Item Value
gene id G218530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5734783 ~ 5735316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249107
tggcagaatgacATAATGATGATGTTTAAAGCATGTAGATGTAAATAATACACTACACTGAAACTATTTTAGCATGGCCTGGGGTAGTCCCATTAGTGCAGTCCCCTTGGGATAGGATGGTGGGCCTATAGTTTAACACCTGTTGACACCACATGGTTACCAATTCAATGCAAAAACCTACATTAGGTCTGACCTTAAAGTAATGTGAGCTTCTTGCTTGCTTGCAATGTGGGTGGAAAAATGCTTAAATTAACCTGGGACAAATACAATTCAGCTGTCGATATAGTACGGAGGTCGAATAGGTATGGGTCTATGGTGCCGGCTACATTGATATAGGGCCTAAAGTGTCTTTAACAATAGTAGGAATACGTTTGATGAACTTCAAACATATTCAGATTGATAGCTACATGCTTAATCATCTTCTACAGATCAACTTCAACCATCATGTGAACACTATTTAGGTGGAGACTGTAAATGCTTCATCATTTACATCCATAACACACGCGGTAATGCTGCCAGTAGCATGCGGCTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249107 True 534 lncRNA 0.52 1 5734783 5735316

Neighbor

gene id symbol gene type direction distance location
LOC110535554 LOC106605965 coding upstream 1725 5729917 ~ 5733058 (+)
LOC110534121 slc4a7 coding upstream 28638 5637262 ~ 5706145 (+)
LOC110535491 LOC106606078 coding upstream 107347 5533015 ~ 5627436 (+)
LOC118936615 LOC106585480 coding upstream 122661 5605777 ~ 5612122 (+)
LOC110493157 LOC106585480 coding upstream 197660 5504091 ~ 5537123 (+)
cklf7 cklf7 coding downstream 490 5735806 ~ 5744817 (+)
trnat-ugu-30 NA coding downstream 65561 5800877 ~ 5800949 (+)
LOC110508149 LOC106593364 coding downstream 87075 5822391 ~ 5898142 (+)
LOC110508220 sc61b coding downstream 221941 5957257 ~ 5963980 (+)
LOC110534158 nr4a3 coding downstream 353189 6088505 ~ 6124399 (+)
G218553 NA non-coding upstream 6044 5728438 ~ 5728739 (+)
G218551 NA non-coding upstream 7249 5727075 ~ 5727534 (+)
G218547 NA non-coding upstream 18909 5715649 ~ 5715874 (+)
G218544 NA non-coding upstream 25696 5708877 ~ 5709087 (+)
G218507 NA non-coding upstream 26754 5706326 ~ 5708029 (+)
G218559 NA non-coding downstream 15114 5750430 ~ 5750652 (+)
G218528 NA non-coding downstream 18012 5753328 ~ 5754411 (+)
G218561 NA non-coding downstream 19730 5755046 ~ 5756568 (+)
G218562 NA non-coding downstream 22054 5757370 ~ 5758235 (+)
G218563 NA non-coding downstream 24177 5759493 ~ 5759798 (+)
G218487 NA other upstream 101302 5543930 ~ 5633481 (+)
G218465 NA other upstream 173512 5460092 ~ 5561271 (+)
G218301 NA other upstream 408774 5325427 ~ 5326009 (+)
LOC110507709 LOC106574077 other upstream 712910 5018589 ~ 5026840 (+)
G218558 NA other downstream 12909 5748225 ~ 5748742 (+)
LOC110535756 stx17 other downstream 394014 6129251 ~ 6157940 (+)
LOC110534148 invs other downstream 472187 6174662 ~ 6228920 (+)

Expression


Co-expression Network