XLOC_021805 (CU041363.1)


Basic Information

Item Value
gene id XLOC_021805
gene name CU041363.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32194408 ~ 32201494 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043249
GCATAAAGCACggccaaatatatttatatattatggcACCCAAAGAGCATAATCGTGATTCCAATCTCTTGTCCGCACGATATCGGCATTCAGCATATTTCCTGTTTGTTTTGGTACAgAGGTCTGTTGAGTCCGGGGATGTACTTGAGCAGCCTCCGCCTGAAGCTCTTCTGTTTTGGTTTGCGCTGCAGGCTGCTGAAGCCTCCGCACTGCTGTTTTTCTCCGTTTGGCACTGctgatgatgatgctgatgatgatgatgatggaggcCTCAAGTAGCTGCGTGTGCTGGCACTGcgggtcaggctggttttagcagtGGTGAAGAGCTCGCTGGCGGGTCGAATGAGACGTGGGCGAGTGTTCTCCTGTTTAGCATGGATCTGGTCATTGCTGGTGTTGTTGAAGATGCAGGTCTGGTAGAGCGGGTCGTCTTCAGCCGTGGCGGCGCTCAGATGGCTGACGCTGCTGCTGGTGCTGTCGGTGCCCCGTAACGCTCGCAACGCTGCAGGACTCGGAGCTCCCAGACTCCCATAAACACCAGCTGATTCCAGAGACTCGTACATCGCCACATCACTCATCACGATACCTGTGAGAGGGGAAACAGagttatatatatgcacacacatacactatacagttgaagtctgaattattagcccccttagaatttcccaaatgatgtttaacagatttagcacatttttacagcgtgtctgataatattttttcttctggagaaagtctgatttgtttagttttggctagaataaaagcagttttaaattttttaaagaacattttaaggtcaaaatgattatcccctttaagctatattttgtttcaatagtcaacagaacaaccCATcggtatacaatgacttgcctaatgac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103681

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043249 True 893 lncRNA 0.46 2 32194408 32201494

Neighbor

gene id symbol gene type direction distance location
XLOC_021804 zgc:56699 coding upstream 86800 32101202 ~ 32107608 (+)
XLOC_021803 cd63 coding upstream 108469 32066168 ~ 32085939 (+)
XLOC_021802 tpx2 coding upstream 133523 32028574 ~ 32060885 (+)
XLOC_021801 trappc6b coding upstream 167210 32021803 ~ 32027198 (+)
XLOC_021800 plagx coding upstream 174210 32011768 ~ 32020198 (+)
XLOC_021806 NA coding downstream 8764 32210258 ~ 32213360 (+)
XLOC_021807 NA coding downstream 48862 32250356 ~ 32253077 (+)
XLOC_021808 slc39a5 coding downstream 134377 32335871 ~ 32352179 (+)
XLOC_021809 taf8 coding downstream 190967 32392461 ~ 32423348 (+)
XLOC_021810 si:ch211-66i15.5 coding downstream 204515 32406009 ~ 32409928 (+)
XLOC_021795 NA non-coding upstream 308495 31863739 ~ 31885913 (+)
XLOC_021793 BX927365.3 non-coding upstream 526865 31667429 ~ 31667543 (+)
XLOC_021791 CR759830.2 non-coding upstream 760745 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 761060 31433273 ~ 31433348 (+)
XLOC_021785 NA non-coding upstream 1108457 31078564 ~ 31085951 (+)
XLOC_021812 NA non-coding downstream 278836 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 361116 32562610 ~ 32562814 (+)
XLOC_021815 NA non-coding downstream 375556 32577050 ~ 32579434 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) LOC120570390 NA misc NC_053123.1 CM020920.1 37930943 ~ 38355465 (+)