G218601 (LOC106606061)


Basic Information

Item Value
gene id G218601
gene name LOC106606061
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5927315 ~ 5931031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249206
ACAGCTTTATTGATAACAAAAACACTTGCATGTTAGACACTAAACACTGTTTCAGTGAGGAAGCATTTCCATGGAACACAACGGTTCAGTGAACGGTACAAATACAACTGGACTCTGTGCCATAGATTCCTTCAGCGTTAGGCCATATGCTGCAGGGCCAAGGCAAGCTGTCAGACAGAGCCCATGTCCCTGGCTGTCATCATGTCCACTACAGCCTCAGTGCTGATCGGTGTGTTATTGCATATCTACAAAGGAATCATGCACCATCAATCATACAGTCAGTTGCCCtatcatcagcaaacagtgatcacacacacacacacacctcgccaCAGACAAAGGAAACATGACCAAGCACGTGGTGGAATAAATCAGTCCTAAGAAAATGGACCCTCTCACACATAGAGAAAAGAGAACCCTGTCTTAATCATCAGCATGTAAAATGGCATTGTGGAATACAGTAGAGAGTTCAGTGTTACTCAGTGAGACTGGgctgaaacaaacaaaaaaacatctgttCAACCACCTAGTCTTAGTTTCTGTATAcaaatactataatactactactaataatactgtaTTTCCCTGTGGAGAATGAGTGTTGTGTAAAGCATGGCTGCATACAGAAGCAGTatgtttcagcaggataataaacTATGACCCGTCTGCCTTTCTTTGGCTCACATCAATCTGGACGGTTCTCTCTAAGTGAAGTCTCTCTCCAGGCTCAGTAGtctgtcccagtgtgtaatgTCTCCTTGTATCGTGTCTGTAGGTTCTTCACATATTCAGGGTCCAGTTGTGATTCACCACATGCGTTGGAGTAATACTTGTTGTCAGGAGTGTGATACCTTACTGTCGTAAACATAAATACACTAAATGAAATACCTTGCCAAAACTAAAGGTTATGCTACTGTTCTCTAGAAACACACAGTATTTCAGATATTCTGACTAATGGGTTAGTGTATGTTGTTATGGTAGCACAGTACAATTTTCAGAATGATTTGCAAGCTTCCTGATGAGTCCTCAATGTAAATTATATATAGTAtcctactgtatatatttattcatatatatttatagtGTAATTCTGTGTAAAGAGCACCCTGCATTGAGGGTGTGGCAGACAGAAATACAATGAACTCTCAGTCTTATTgctgtctctttcctcttctctctacttctctcctcgtctcctctcatctctccacttctctcctcgtctcctctcatctctccacttGTCTCCCCTCATCTcgtctctcctcgtctcttctctcctcctctgtcatctcgtctcctctcttctctcctctctctgggttAATGGgttgtctcttctctccttttgtctcctctctcatcttctctcatcTCGTCTCCTCTAATCTcatctcctctcgtctcctctctctcaggggGTGCCCATCAGCAGATAGAAGGTGAGGGCTACTATGAGCAGCAGACAGAAGGGTGAGGAGAACGTCTGGTAGGCAGTAGACGGCATGAAGATGTCCTCATATTTATAGATGCTGATCATGTGATCAGAGACTGGCGGAGCATCGTTGTCATGACGTGTGATGGAAcctggaggaaagagaagagTGGGgagcCCAGATTTGGGAactcaatcgaacatctctggagagacctgaaaatagctgtgcaacgacgctccccatccaacctggcagagcttgagaggatctgcagagaacaatgggagaaactccccaaatataggtgtgctaagcttgtagcatcatacccaagaagcctcgaggctgtaatcactgccaaaggtgcttcaacaaagtagtgagtaaagggtctgaatacttatgtaaatgtgatatctgttttttattttgaatacattttcaaaaatgtctaaaaagctgtttttgctttgtgatgatggagtactgtgtgtagattgaggaggaaaaaacacaatggaatccattttagaatagggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttacgaatggaCTGTACATACTAatgaacacacacatccactctctgcacacacacaataccacacacacacccagtcctTGACTGACCTTGTATAGCAGGCCCCCAGGCCAACAGGTAGAACCAGGAGAGATGCAGATCCACCAGTGTCTCCTCTCTCGGGACGTAGAGCGGCCGTTTGAAGCGACAGGTCACACGGTTGTTGTCAAACACACCCTCTTCGTCCCTGGCAGGATTCCTCTTGATCTCCTTAGCCCACTGGCCCACGTTGTAGAAGTGATGGATACGAACACGCCCATTATCGTCATGGACACAGCCCATCACGTCATCTCCTCCCTgagaggggtgggggtgaggAGAACCAATCAGCATGAAGGATAGGTTGACCAATCAGCCTTGTTTTTGTGATGTGTCTTTCATGGCAGACTTCATGTGTACCAGATGTAGTAAAAGCCTGAGCTGACTCTGACCCCAAAATGTCTGTAGAGGTGCTGTTGACTAACCAAGAGTAGATTGTATCAAAAGAAAGAAAGTCCCACactctatacagtgcattcgtaaagtattcagaccccttgactttttccacattttgttacattacagccttattctaaaatggattaaacaaaacatttcctcatcaatctacacacaataccccataatgacatcacaataccccataatgacatcacaataccccataatgacatcacaataccccataatgacatcacaataccccataatgacaaagtgaaaacaggcgtTGCTAGATTTCTTTTGCAAAATTATTAAACATTTaaatcagaaataccttatttacataagtattcagaccctttgctatgagactcgaaattgagctcaggtgcattctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacctgtggtaaattcaattgattggacataatttggaaaggcagtcacccgtctatataaggtcccacagtggacAGGGCATGTTAGAGCAAACACAAAGCCACGAGGTCGacggaattgtccatagagttccgagacaggattgtgtcaaggcacagatctggggaagggtaccaaaacatttctacagcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccatgactcttcttaaagctggccgcctggccaaactgagcaattaggggagaagagacttggtcagggaggtgaccaagaaccccatggtcactctgacagagctccagagtgcctagacaacacaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccagacttcaacccgatcaaacatctctggatagacctgaaaatagctgtgcagcgacgctccccatccaacctgacagaacttgagaggatttgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagtgtcatacccaataagactcgaggctgtaatcactgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatttaaatgttatatttcagtttattttattttataaatatgcaacaa

Function

NR:

description
DOMON domain-containing protein FRRS1L-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249206 True 3659 lncRNA 0.43 2 5927315 5931031

Neighbor

gene id symbol gene type direction distance location
LOC110508149 LOC106593364 coding upstream 31782 5822391 ~ 5898142 (+)
trnat-ugu-30 NA coding upstream 126366 5800877 ~ 5800949 (+)
cklf7 cklf7 coding upstream 182498 5735806 ~ 5744817 (+)
LOC110535554 LOC106605965 coding upstream 194257 5729917 ~ 5733058 (+)
LOC110534121 slc4a7 coding upstream 221170 5637262 ~ 5706145 (+)
LOC110508220 sc61b coding downstream 26226 5957257 ~ 5963980 (+)
LOC110534158 nr4a3 coding downstream 157474 6088505 ~ 6124399 (+)
LOC110535756 stx17 coding downstream 198220 6129251 ~ 6157940 (+)
LOC110534148 invs coding downstream 243631 6174662 ~ 6228920 (+)
LOC110535707 LOC106574428 coding downstream 317238 6248078 ~ 6254241 (+)
G218632 NA non-coding upstream 63853 5861340 ~ 5863462 (+)
G218587 NA non-coding upstream 125344 5801182 ~ 5801971 (+)
G218572 NA non-coding upstream 155021 5771867 ~ 5772294 (+)
G218563 NA non-coding upstream 167517 5759493 ~ 5759798 (+)
G218650 NA non-coding downstream 9083 5940114 ~ 5940338 (+)
G218652 NA non-coding downstream 12725 5943756 ~ 5944020 (+)
G218653 NA non-coding downstream 18967 5949998 ~ 5950197 (+)
G218663 NA non-coding downstream 45832 5976863 ~ 5981808 (+)
G218664 NA non-coding downstream 45932 5976963 ~ 5981969 (+)
G218558 NA other upstream 178573 5748225 ~ 5748742 (+)
G218487 NA other upstream 293834 5543930 ~ 5633481 (+)
LOC110535491 LOC106606078 other upstream 300737 5533015 ~ 5627436 (+)
G218465 NA other upstream 366044 5460092 ~ 5561271 (+)
LOC110534143 tmem67 other downstream 328906 6259904 ~ 6277154 (+)

Expression


Co-expression Network