G219733


Basic Information

Item Value
gene id G219733
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6156215 ~ 6157934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250647
AGAAGCAGATTTTATTGGTTTTCTTTGGCAATATAAAACCCCAGTAAATCATCACATAGATTAAGAGCATCCATATTTAGTTGGTTACTGTTGTAGTAGATGACATCAGTGTGACCCGTTTCTCTTGTGGCACTTTTAAGAAGGAACACTTTGGCCTCACTCATCACAACTTTCTACCTGGTACACCCAGGACAGCTGTGTTTATCCTCCTAACCTTTCTCAATCACAATCACTCACTCTTATTCTCTGCTCCCCAGTCTGTCAAATTGACACATTCCAGTCTGTCAGAGGGAGCAGGCCTCTCCTCTCCAGCAGGGTTCAGACCAGGACACAGTCTTGACATTTACTGCTGtttatacctccctctctcttctctccctctgttaaTGAGCTGTATACTCTAAGCAGAGCAGCAGACATATTGGCAGACTCAGATAAACATCAATAAGTTCATAAACTAGAGAGATGGGTGACTGCTCGACCCAGGCAATGTCTGGCTTTGGCACAGTGTGTATTTGATAAAGACTGAGGGAAGTTAAGACAAGTCCGTCCAAGAAACACATAATAACATGACTTTAATAAAACTACCGTCTCTCCGTCTGTACTAAAAGGCACCAAACAGCAGGACTTATGTTACAAAACTAGGCAGGCTGTAGTGTTTGCTACTAATAATGCACATCTTTTCATAATATATAATCATACACTTAAAGTAACTGTGCAGTGAAAGTTCTGTAatctcatacccaaataatgttgactcatcctatacttGTATTTGTGGCCAAAATATTAATTGtagaaaacaaaaaacaaacttGTATCTCAACTTGCCGTCATCCtaaggaggatgagctggccaatcagcgatCCACTCACATGAATATTTTTAAGATCagtatacgcccacaccattccaacacagaaaagctgctttttaacatatTTAAAAGgttttggaaggaaaactatttcatttatattgtaaaaatgtgtaGCTCATATttaatagaaatctggaaacactggacagttactttaaagtgTTAAATACAAAGCCAACAGACCCAGCATATATACATACATCACACTCAACTAACACAGCATTCACACCTCCCTTTCACACTCAGGTCCTCAAGGCTCTCCTACAAtgtttaaaagtcttattgaTTGGGAAGTGGTAGATCCCAGTGGCAGGCTTCTCTTCACAGTAGGCCTCTCTTGACAGACCTCTCTCCTCCGTCTATTGGCAGCGAGAAGGAGGAGGAGTTCCTTATTACCACAGTAAAGAGAGCAAATCTATTGGTCAAACAACTGATTGTTAGAGTGGACAGCCAGTTAGTCTGAGGGATATCTAGGTTGAGTTCCTACCCGACTAGATGCACAGGCGTTgcattgcatcaaccaatggttgtgcgCCACTTCAACTGTGCATCAGATTGCTAtatcatatgatgtggttagctgatatatAAGGTCTAGCATGCGTCTGCAATATAGTCGGGCAGTACCAGGACCAGTGTAAGCTTCTGGAGGTCAGAGGTCCCTTCACGACCAATCAGAGGTCACTTGTCCTTGTCCAGCGGTGGTTCTGGTTCCGTAGGGGGTGCAGTGAGCTGGTTCATCTGGGACTGTACTCTAGCTCTGCGTTTCTTCTGGACCAGGTTCCCCCCTGCAAACCCCAGAGCCCCCCCTCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250647 True 1696 lncRNA 0.40 2 6156215 6157934

Neighbor

gene id symbol gene type direction distance location
LOC110520778 LOC106606060 coding downstream 199183 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 223258 5927299 ~ 5932957 (-)
LOC110508150 tmem245 coding downstream 230544 5908171 ~ 5925671 (-)
LOC110508233 NA coding downstream 238414 5913078 ~ 5917801 (-)
LOC118944866 NA coding downstream 257984 5837102 ~ 5898231 (-)
LOC110535692 LOC106593159 coding upstream 96 6158030 ~ 6173396 (-)
trnat-cgu-2 NA coding upstream 65863 6223797 ~ 6223869 (-)
LOC110535643 tex10 coding upstream 70978 6228912 ~ 6259816 (-)
LOC110535663 cdh17 coding upstream 142063 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 170160 6328094 ~ 6332714 (-)
G219748 NA non-coding downstream 2267 6153491 ~ 6153948 (-)
G219729 NA non-coding downstream 31462 6099445 ~ 6124753 (-)
G219734 NA non-coding downstream 35398 6106766 ~ 6120817 (-)
G219668 NA non-coding downstream 70066 6085170 ~ 6086149 (-)
G219670 NA non-coding downstream 74399 6035612 ~ 6081816 (-)
G219761 NA non-coding upstream 23847 6181781 ~ 6182031 (-)
G219762 NA non-coding upstream 24235 6182169 ~ 6185965 (-)
G219782 NA non-coding upstream 47935 6205869 ~ 6207103 (-)
G219798 NA non-coding upstream 78264 6236198 ~ 6236600 (-)
G219799 NA non-coding upstream 81035 6238969 ~ 6240513 (-)
G219592 NA other downstream 404121 5751724 ~ 5752094 (-)
G219591 NA other downstream 407501 5748158 ~ 5748714 (-)
G219500 NA other downstream 467924 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1146809 5008084 ~ 5009406 (-)
G219200 NA other downstream 1384164 4770350 ~ 4772051 (-)
LOC110534138 LOC106605946 other upstream 171668 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 175034 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 328566 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 772057 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 790864 6948445 ~ 6952369 (-)

Expression


Co-expression Network