G219782


Basic Information

Item Value
gene id G219782
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6205869 ~ 6207103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250701
gggtcagACACTATTGCAATAATAATttgggggtgcttatatttgaCCTGTTAATGTGTATGGGAAATGTGTTTCTTGCATATCCAAACTCCCGCTGGGGCcacagccagggtcaccattgtcaggtgttacgttccccagtttatgtgttgtagtttgtgtatttgcatgtgttttatttcaggaaatggcttcctgaaatccctcaagctgctgattggtcgactccagggctaattggagagctgaccccgccccctcgtcaagacacagctgtctccagttacattcattctgaagctatataaaagccagtgttctgttcagaagagagagattttggaggtagggattactgagagagatttgctgggaggtcattgcaaagCGATTGATTGTGATAGAGAGATTTTTGCTGGAGGTTGatttgctgggagttcattgctgggaagttggtatgttttgtgagtttgttgctcagatagagcttatttgatgtactttgtttgtttgtgaaattgtttaatattctgtttcatttgttcccagggggaaaggggaaggcaccttgggagtgcttaggcaagaggcccgcgggcatacatatacccgtagtatattcactgtctaggcacactaggtaagacctgggcggaccaccccctgtattttggttagggcaccaggtggtgctaaattaggtaagtagtgggtaggcaggtaagataggagagggggggggctttgagatttactttctttgctttggttccgtccagccccttttccccatattaccgtgtaaaggaataaagtccttgtaaacggtaccacattctgtctgtgtcatccttactcgcacctacagtccatacctttttcacttcacagagagtttagttgtagcagggttccctcttcatagaggcgtgcgtaacacagGCCCCCGTggagcaattggggttaagtaaccttttggttactggcccaacgctctaacctccaGGCTCTAACCTCCAGGCTCTAACCTCCAGGCTCTAACCTCCAGGCTCTAACCTCCAGGCTCTAACCTCCAGGCTCTAACCTCCAGGCTCTAACCTCCAGGCTCTAACCTCcaggctctaacctctaggctctaacctctaggctctaacctctaggctctaacctctaggctctaacctctaggctctaacctctaggctctaacctctaggctctaacctctaggctct

Function

NR:

description
PREDICTED: transcription factor Dp-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250701 True 1235 lncRNA 0.48 1 6205869 6207103

Neighbor

gene id symbol gene type direction distance location
LOC110535692 LOC106593159 coding downstream 32473 6158030 ~ 6173396 (-)
LOC110520778 LOC106606060 coding downstream 248837 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 272912 5927299 ~ 5932957 (-)
LOC110508150 tmem245 coding downstream 280198 5908171 ~ 5925671 (-)
trnat-cgu-2 NA coding upstream 16694 6223797 ~ 6223869 (-)
LOC110535643 tex10 coding upstream 21809 6228912 ~ 6259816 (-)
LOC110535663 cdh17 coding upstream 92894 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 120991 6328094 ~ 6332714 (-)
LOC118944879 LOC106605946 coding upstream 125872 6332975 ~ 6333735 (-)
G219762 NA non-coding downstream 19904 6182169 ~ 6185965 (-)
G219761 NA non-coding downstream 23838 6181781 ~ 6182031 (-)
G219733 NA non-coding downstream 47935 6156215 ~ 6157934 (-)
G219748 NA non-coding downstream 51921 6153491 ~ 6153948 (-)
G219729 NA non-coding downstream 81116 6099445 ~ 6124753 (-)
G219798 NA non-coding upstream 29095 6236198 ~ 6236600 (-)
G219799 NA non-coding upstream 31866 6238969 ~ 6240513 (-)
G219775 NA non-coding upstream 41002 6248105 ~ 6249556 (-)
G219776 NA non-coding upstream 49907 6257010 ~ 6257525 (-)
G219802 NA non-coding upstream 56274 6263377 ~ 6263852 (-)
G219592 NA other downstream 453775 5751724 ~ 5752094 (-)
G219591 NA other downstream 457155 5748158 ~ 5748714 (-)
G219500 NA other downstream 517578 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1196463 5008084 ~ 5009406 (-)
G219200 NA other downstream 1433818 4770350 ~ 4772051 (-)
LOC110534138 LOC106605946 other upstream 122499 6329602 ~ 6349701 (-)
G219820 LOC106605946 other upstream 125865 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 279397 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 722888 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 741695 6948445 ~ 6952369 (-)

Expression


Co-expression Network