G219808 (LOC106606054)


Basic Information

Item Value
gene id G219808
gene name LOC106606054
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6288099 ~ 6290161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250733
GTCAGTGTTTTATTAAGTTTCCAAATACAAAAAAACTTTAGTCTCAAGCCCAAACAGGTAAagacactgtacatacatacatacctgtCACATCTCATATAATTGTGGATAAATACCTGCGACATATtaaaagttgcataaataacctTGAAGTATTCAGCCAGCGTACAAAACAGAGCCACCTTCAGCTttacattctctcctctcctaaaTATACACCACCATGAGATATACATATGATGCACACCACGGTTAGTGTCCTGCCAACAGTGACTAAGTCTGTCTCTGTTTTAGTCACTCCTGGAGGTCTGGCATGAACATGACAGGAGATGGTTACAGTTCAATTCCTAATTCCATGGTTACCTCAGACAGAGATCTGACACCAGGCTAGCAATGATTCACTGTTAAAAACTAAAAAGTTAACtttctaaaaacatttttgaTAGAATACACACCATGTAAGCATGATGACGTTAGTATACCACCCCCCCCGTATGAGAGTATAATTGTCAAAAAACACGAGAGGTTCAACCACTATGTTCCTTTGAAACATGTATACTCTGCAACCCTAAAACAATAAACGTCTGatcacacacccctctctctctcctctacagaaTACCACCACTCCTTCAGTCTGCTGTAGAATCTCTCAGACACACTCAGCGCATAACACACCTGATTCCTGTGGGTGAGTAGTTGTGATAGAGGTGTTAGTGCTGGATCTAAAGCCTGCAGTGACGCCGTCTGTCTCagagcaataacatctgctttaTAGACACAGGCAGTTATTCCTCTCGAAGGTTGACAAAATAGTCAATGTTTGAAATCagattaaaaacattttaaataaacATTATTCAAAATATAAGATAACAAGAAGTGTGCCTGGGAGCTCTTGGCTGTCCGTCTGTAACAAGTATAAAGGACACTGATCCATCCAATgacagaacacagacagacagagcccaaCTATGTAACAGCAGAGCCATGCGGTAGAGCCAGGATGGAGGCCAGTTGCAGCTCTAGAGCAAGACAGATGCTGCAACTGCACAGCACACAATCTGTGATATGAAATAGGGAGGGATGTTTGTAGAGGAGTAGACAGGCCAGATTGAACAAACACAAAGGCTGCCACTGTATCATTACCTCAATGCTCAGACAACATAGTTATAAAGCAGCAAACTCTTTAGGCACAAATGAAAGTGTCCTATGGGCAGAGACTGTGACAGAGCAGAGAAGCAGAATGCTGCAGGGAGGTTGATCAAATATCCTTTAAAAAGCTTCATACCAGGCCACAACACTCAGAAAAGAGCCAACTTGTGATCAGTATCAGCAAGCATTTCAACAATCCACATGACCAGGACTGTGTGCTCACATGTGCACATACTGTACACGCACCTCTTCAATAACAATCCTAAAATAAGGAGTCCGAAGGTTGGCAGTCCTCCCTCTGCAGGGTTAGTCCATTAAcagtatgttttgtgtgtgtttggtaaAATAAAGATGAGACGTTAACCATGTGTCTGTAGCAAGACCCAGTCCTCACTGGACCTGTTTATCCTCCTAGAAAGTCAACTTCCTGTTCATGTCCACGTTCCCCTCTGATAGGCTGAGCTGGCTCAGGACTCCCCCCCTTGGCGCTGGTGTCCAACCACGTGGGGGTTGAActgtgtgatgatgatggtgatgtcaTCGCGGTACATGCGGGCCAGTTCCTCAGGCAGAGACAGCATCTTGGACAGCGTCTCGTGGTCCACTGCTCCAAACTCATTGTTGCCCACCGCGTGGCGAATCAGGTGGGTGGCAGCGTTCTGGTCCTGGAACGCCAAGGAGGCACGGGCCTTCCTCTCAGCCAGCAGCCCCTGCATCTGTCCCAGGGTGACATGGTAACCCCCCACGGTGAGGGGCTGGCGCTGGTGGACCCCCGTTAGATACTCCCCTACGATCCGGACCACCTCCTGTCGATGGAGCGTCTCCCACAGCCCGTCTGTACCCA

Function

NR:

description
pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250733 True 1999 lncRNA 0.46 3 6288099 6290161

Neighbor

gene id symbol gene type direction distance location
LOC110535643 tex10 coding downstream 28283 6228912 ~ 6259816 (-)
trnat-cgu-2 NA coding downstream 64230 6223797 ~ 6223869 (-)
LOC110535692 LOC106593159 coding downstream 114703 6158030 ~ 6173396 (-)
LOC110520778 LOC106606060 coding downstream 331067 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 355142 5927299 ~ 5932957 (-)
LOC110535663 cdh17 coding upstream 9836 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 37933 6328094 ~ 6332714 (-)
LOC118944879 LOC106605946 coding upstream 42814 6332975 ~ 6333735 (-)
LOC110534138 LOC106605946 coding upstream 47731 6329602 ~ 6349701 (-)
LOC118944880 rad54b coding upstream 63934 6354095 ~ 6377182 (-)
G219807 NA non-coding downstream 14875 6272494 ~ 6273224 (-)
G219804 NA non-coding downstream 16202 6270954 ~ 6271897 (-)
G219802 NA non-coding downstream 24247 6263377 ~ 6263852 (-)
G219776 NA non-coding downstream 30574 6257010 ~ 6257525 (-)
G219775 NA non-coding downstream 38543 6248105 ~ 6249556 (-)
G219810 NA non-coding upstream 457 6290618 ~ 6293890 (-)
G219811 NA non-coding upstream 9169 6299330 ~ 6299826 (-)
G219819 NA non-coding upstream 37016 6327177 ~ 6331994 (-)
G219822 NA non-coding upstream 54496 6344657 ~ 6407068 (-)
G219847 NA non-coding upstream 95828 6385989 ~ 6386209 (-)
G219592 NA other downstream 536005 5751724 ~ 5752094 (-)
G219591 NA other downstream 539385 5748158 ~ 5748714 (-)
G219500 NA other downstream 599808 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1278693 5008084 ~ 5009406 (-)
G219200 NA other downstream 1516048 4770350 ~ 4772051 (-)
G219820 LOC106605946 other upstream 42807 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 196339 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 639830 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 658637 6948445 ~ 6952369 (-)

Expression


Co-expression Network