G219810


Basic Information

Item Value
gene id G219810
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6290618 ~ 6293890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250735
caataacaccaacataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaacataaacatgtaacaccacagtccaataacaccaccataaacatGTAACACTGTCCAATAACACCAACATAAACATGTAACACCACAGTCCAATAACACCAGCATAAACATGTAACACCACAGTCCAATAACACCACAATAAACATGTAACACCACagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccagcataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccagcataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaacataaacatgtaacaccacagtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccaccataaacatgtaacaccacagtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaacataaacatgtaacaccacagtccaataacaccaccataaacatGTAACACCACAGTCCAATAACACCAGCATAAACATATAACACCACagtccaataacaccaccataaacatgtaacaccacagtccaataacaccagcataaacatgtaacaccacagtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacaccactgtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccaccataaacatGTAACACTGTCCAATAACACCAGCATAAACATGTAACACCACAGTCCAATAACACCAGCATAAACATGTAACACTGTCCAATAACACCAGCATAAACATGTAACACTGTCCAATAACACCAGCATAAACATGTAACACTGTCCAATAACACCAGCATAAACATGTAACACTGTCCAATAACACCAGCATGAACATGTAACACTGTCCAATAACACCAGCATAAACATGTAACACtgtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacactgtccaataacaccaacataaacatgtaacaccacagtccaataacaccaccataaacatgtaacaccacagtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccaccataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacaccacagtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacaccacagtccaataacaccaacataaacatgtaacaccacagtccaataacaccaccataaacatgtaacaccacagtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacactgtccaataacaccagcataaacatgtaacaccacagtccaataacaccaccataaacatgtaacactgtccaataacaccagcataaacatgtaacacacacaaactaaatACACATATTCCCACTATCAAAACAAGTCTATACACCCAAACGCATAGATTGGTAACTAAGGACAGAAAAACCTAGGAGAATAACAGTCCTGCCTAGAGGTCACTGAATCAAATAAATTAAACACGTGTGCATGCGGACGTCTCAGTCATATTTCTGTGTAAGGGATCTTCCAATAAGGTTCAATAACTACTAGCGCCATCTAGTGACTGACAATGGACATGTCTGAGTTACTACTCCGCAGAATGAGTGCAGTGTGAACATAATATGAACCAGACTGGTTACATTACATGGACCTTGCTATACAAGTAGCCAAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605939

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250735 True 3273 lncRNA 0.37 1 6290618 6293890

Neighbor

gene id symbol gene type direction distance location
LOC110535643 tex10 coding downstream 30802 6228912 ~ 6259816 (-)
trnat-cgu-2 NA coding downstream 66749 6223797 ~ 6223869 (-)
LOC110535692 LOC106593159 coding downstream 117222 6158030 ~ 6173396 (-)
LOC110520778 LOC106606060 coding downstream 333586 5951557 ~ 5957032 (-)
LOC110508167 LOC106606061 coding downstream 357661 5927299 ~ 5932957 (-)
LOC110535663 cdh17 coding upstream 6107 6299997 ~ 6325652 (-)
LOC118936454 LOC106605946 coding upstream 34204 6328094 ~ 6332714 (-)
LOC118944879 LOC106605946 coding upstream 39085 6332975 ~ 6333735 (-)
LOC110534138 LOC106605946 coding upstream 44002 6329602 ~ 6349701 (-)
LOC118944880 rad54b coding upstream 60205 6354095 ~ 6377182 (-)
G219808 LOC106606054 non-coding downstream 457 6288099 ~ 6290161 (-)
G219807 NA non-coding downstream 17394 6272494 ~ 6273224 (-)
G219804 NA non-coding downstream 18721 6270954 ~ 6271897 (-)
G219802 NA non-coding downstream 26766 6263377 ~ 6263852 (-)
G219776 NA non-coding downstream 33093 6257010 ~ 6257525 (-)
G219811 NA non-coding upstream 5440 6299330 ~ 6299826 (-)
G219819 NA non-coding upstream 33287 6327177 ~ 6331994 (-)
G219822 NA non-coding upstream 50767 6344657 ~ 6407068 (-)
G219847 NA non-coding upstream 92099 6385989 ~ 6386209 (-)
cf191 cf191 non-coding upstream 202805 6496695 ~ 6499580 (-)
G219592 NA other downstream 538524 5751724 ~ 5752094 (-)
G219591 NA other downstream 541904 5748158 ~ 5748714 (-)
G219500 NA other downstream 602327 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1281212 5008084 ~ 5009406 (-)
G219200 NA other downstream 1518567 4770350 ~ 4772051 (-)
G219820 LOC106605946 other upstream 39078 6332968 ~ 6338813 (-)
LOC110507902 LOC106593870 other upstream 192610 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 636101 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 654908 6948445 ~ 6952369 (-)

Expression


Co-expression Network