G218798 (LOC106605946)


Basic Information

Item Value
gene id G218798
gene name LOC106605946
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6328378 ~ 6338768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU249447
AACAAAACCAACGGAAAATATCCACACACAGCAAAACATACACAAGATGAGCAGTGCAGATTATCAGTTATCTCAATCGGACAGATAGGACTATGTACAAAACCACGAACATTTAAGCACCTTGTTATCAGGCTTCAAATTGTCTGGGTAACCCTGGTCAAGCATTttgggagagagaacgagggatgatagagagagaggagagagtctcagtGAGGGATTAAAAAAGGACAGGAATTAACATCTCTCTCATGACCCTAAAAGGATTAGAGATCACTAATTATCTAgcacctctctcttttcctttttcaatctctctgtcggCTGAGATTGTCAGAACACTGCATGTCCATTGGTTGATTCTCCAGACCGTCACAGAGGCTGGCGAATGGGGCGACAGTTTTGAGGGGTCAGTCTAATGTAGACTGCAGTAggggtggggttgtgtgtgtgtcctggatCTTAGAGCACTGAAAGATCATGGCAGGATTTGGACTTCAGACGGAATGCGACGTTGGCATTGTTCTTGGCCCCCATCTTGTCCAGGAAGCGTTTGGCCTTCTTGGGTATGCTGTCGcggcgtgagtgtgtgtgtctgcggcgGTTGTTGTTCTCCTTGGTGTCTCTGCGTAGTCGTAGCTGCTGTACAATGCCATGGAAGGTTGGCCAGACGTTGTGTTGCATTGCTGCTGACGTCTCGATGAACTTACAGTCAAACACTGCAGCACACACACGGCCCTCTGGTGAgaaatttggaagacccatttgcgaccaaactttaactttaactgatgtctggaattgttgcttcaatatgtccacataattttcctccctcatgatgccatctattttgtgaagtgcaccagtcccttcttcggcgtgcaagcctccccctttttcctttaaacataatgatggtcattatggcaaaatagttatatttttgtttcatcagaccagaggacatttctccaaaaagtacgatctttgtccccatgtgcagttgcaaaccgtagtctggctttttaggGGGGTtttgcagcagtggcttcttccttgctgagcagcctttcacattatgttaatataggactggttttactgtggatatagaaacttttgtacctgtttcctccagcatcttcacaaggtccttttctgctgttctgggattgatttgcacttttcacccccaagtatgttcatctctagaaaGCGTCTGCTTTCTGAGCGGTATTCCGGCTGCGTGGgcccatggggtttatacttgcatactattgtttgtacagatgaaagtggtaccttcaggcgtttggaaattgctcccaag
>TU249451
AACAAAACCAACGGAAAATATCCACACACAGCAAAACATACACAAGATGAGCAGTGCAGATTATCAGTTATCTCAATCGGACAGATAGGACTATGTACAAAACCACGAACATTTAAGCACCTTGTTATCAGGCTTCAAATTGTCTGGGTAACCCTGGTCAAGCATTttgggagagagaacgagggatgatagagagagaggagagagtctcagtGAGGGATTAAAAAAGGACAGGAATTAACATCTCTCTCATGACCCTAAAAGGATTAGAGATCACTAATTATCTAgcacctctctcttttcctttttcaatctctctgtcggCTGAGATTGTCAGAACACTGCATGTCCATTGGTTGATTCTCCAGACCGTCACAGAGGCTGGCGAATGGGGCGACAGTTTTGAGGGGTCAGTCTAATGTAGACTGCAGTAggggtggggttgtgtgtgtgtcctggatCTTAGAGCACTGAAAGATCATGGCAGGATTTGGACTTCAGACGGAATGCGACGTTGGCATTGTTCTTGGCCCCCATCTTGTCCAGGAAGCGTTTGGCCTTCTTGGGTATGCTGTCGcggcgtgtgtgtgagtgtgtgtgtctgcggcgGTTGTTGTTCTCCTTGGTGTCTCTGCGTAGTCGTAGCTGCTGTACAATGCCATGGAAGGTTGGCCAGACGTTGTGTTGCATTGCTGCTGACGTCTCGATGAACTTACAGTCAAACACTGCAGCACACACACGGCCCTCTGGTGAgaaatttggaagacccatttgcgaccaaactttaactgatgtctggaattgttgcttcaatatgtccacataattttcctccctcatgatgccatctattttgtgaagtgcaccagtcccttcttcggcgtgcaagcctccccctttttcctttaaacataatgatggtcattatggcaaaatagttatatttttgtttcatcagaccagaggacatttctccaaaaagtacgatctttgtccccatgtgcagttgcaaaccgtagtctggcttttt

Function

NR:

description
GTP-binding protein GEM-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU249447 False 1333 lncRNA 0.46 3 6328378 6338768
TU249451 True 1030 lncRNA 0.46 2 6328378 6333939

Neighbor

gene id symbol gene type direction distance location
LOC110535685 LOC106606054 coding upstream 38208 6277474 ~ 6290170 (+)
LOC110534143 tmem67 coding upstream 51224 6259904 ~ 6277154 (+)
LOC110535707 LOC106574428 coding upstream 74137 6248078 ~ 6254241 (+)
LOC110534148 invs coding upstream 99458 6174662 ~ 6228920 (+)
LOC110535756 stx17 coding upstream 170438 6129251 ~ 6157940 (+)
LOC110489435 LOC106570746 coding downstream 38520 6377288 ~ 6399616 (+)
LOC110508031 esrp1 coding downstream 87366 6426134 ~ 6448961 (+)
LOC110508070 NA coding downstream 153446 6492214 ~ 6496204 (+)
LOC110507908 LOC106605953 coding downstream 160777 6499545 ~ 6510342 (+)
LOC110508080 LOC106606035 coding downstream 174524 6513292 ~ 6527389 (+)
G218794 NA non-coding upstream 9943 6307822 ~ 6318435 (+)
G218793 NA non-coding upstream 21140 6305767 ~ 6307238 (+)
G218791 LOC106605873 non-coding upstream 23109 6303266 ~ 6305269 (+)
G218784 NA non-coding upstream 61874 6266257 ~ 6266504 (+)
G218783 NA non-coding upstream 63067 6265048 ~ 6265311 (+)
G218801 NA non-coding downstream 3182 6341950 ~ 6342178 (+)
G218805 NA non-coding downstream 6077 6344845 ~ 6407086 (+)
G218807 NA non-coding downstream 15009 6353777 ~ 6354480 (+)
G218839 NA non-coding downstream 95679 6434447 ~ 6439646 (+)
G218842 LOC106605951 non-coding downstream 111570 6450338 ~ 6455202 (+)
LOC110508220 sc61b other upstream 364582 5957257 ~ 5963980 (+)
LOC110520771 fam171a1 other downstream 266554 6560989 ~ 6607009 (+)
LOC110507851 acbd7 other downstream 285816 6624575 ~ 6631601 (+)
G218971 NA other downstream 378860 6717628 ~ 6719163 (+)
LOC110507732 LOC106576036 other downstream 455792 6794547 ~ 6811294 (+)

Expression


Co-expression Network