G219820 (LOC106605946)


Basic Information

Item Value
gene id G219820
gene name LOC106605946
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6332968 ~ 6338813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250746
aaaatcaaaagaaatcagccaagacctccacaagtctggttcatacttgggagcaatttccaaacgcctgaaggtaccactttcatctgtacaaacaatagtatgcaagtataaaccccatgggcCCACGCAGCCGGAATACCGCTCAGAAAGCAGACGCtttctagagatgaacatacttgggggtgaaaagtgcaaatcaatcccagaacagcagaaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtttctatatccacagtaaaaccagtcctatattaacataatgtgaaaggctgctcagcaaggaagaagccactgctgcaaaACCCCcctaaaaagccagactacggtttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatataactattttgccataatgaccatcattatgtttaaaggaaaaagggggaggcttgcacgccgaagaagggactggtgcacttcacaaaatagatggcatcatgagggaggaaaattatgtggacatattgaagcaacaattccagacatcagttaaagttaaagtttggtcgcaaatgggtcttccaaatttcTCACCAGAGGGCCGTGTGTGTGCTGCAGTGTTTGACTGTAAGTTCATCGAGACGTCAGCAGCAATGCAACACAACGTCTGGCCAACCTTCCATGGCATTGTACAGCAGCTACGACTACGCAGAGACACCAAGGAGAACAACAACcgccgcagacacacacactcacacacacgccgCGACAGCATACCCAAGAAGGCCAAACGCTTCCTGGACAAGATGGGGGCCAAGAACAATGCCAACGTCGCATTCCGTCTGAAGTCCAAATCCTGCCATGATCTTTCAGTGCTCTAAGatccaggacacacacacaaccccaccccTACTGCAGTCTACATTAGACTGACCCCTCAAAACTGTCGCCCCATTCGCCAGCCTCTGTGACGGTCTGGAGAATCAACCAATGGACATGCAGTGTTCTGACAATCTCAGccgacagagagattgaaaaaggaaaagagagaggtgcTAGATAATTAGTGATCTCTAATCCTTTTAGGGTCATGAGAGAGATGTTAATTCCTGTCCTTTTTTAATCCCTCactgagactctctcctctctctctatcatccctcgttctctctcccaaAATGCTTGACCAGGGTTACCCAGACAATTTGAAGCCTGATAACAAGGTGCTTAAATGTTCGTGGTTTTGTACATAGTCCTATCTGTCCGATTGAGATAACTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250746 True 1320 TUCP 0.41 2 6332968 6338813

Neighbor

gene id symbol gene type direction distance location
LOC118936454 LOC106605946 coding downstream 254 6328094 ~ 6332714 (-)
LOC110535663 cdh17 coding downstream 7316 6299997 ~ 6325652 (-)
LOC110535643 tex10 coding downstream 73152 6228912 ~ 6259816 (-)
trnat-cgu-2 NA coding downstream 109099 6223797 ~ 6223869 (-)
LOC110535692 LOC106593159 coding downstream 159572 6158030 ~ 6173396 (-)
LOC118944880 rad54b coding upstream 15282 6354095 ~ 6377182 (-)
LOC110487828 LOC106570748 coding upstream 28508 6367321 ~ 6372061 (-)
LOC110507893 LOC100380651 coding upstream 59361 6398174 ~ 6425294 (-)
epb41l4b LOC106605949 coding upstream 116020 6454833 ~ 6479408 (-)
LOC110508108 NA coding upstream 129538 6468351 ~ 6470134 (-)
G219819 NA non-coding downstream 974 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 33142 6299330 ~ 6299826 (-)
G219810 NA non-coding downstream 39078 6290618 ~ 6293890 (-)
G219808 LOC106606054 non-coding downstream 42807 6288099 ~ 6290161 (-)
G219807 NA non-coding downstream 59744 6272494 ~ 6273224 (-)
G219822 NA non-coding upstream 5844 6344657 ~ 6407068 (-)
G219847 NA non-coding upstream 47176 6385989 ~ 6386209 (-)
cf191 cf191 non-coding upstream 157882 6496695 ~ 6499580 (-)
G219970 fam171a1 non-coding upstream 264369 6603182 ~ 6607008 (-)
G219988 LOC100136012 non-coding upstream 300127 6638940 ~ 6642155 (-)
G219592 NA other downstream 580874 5751724 ~ 5752094 (-)
G219591 NA other downstream 584254 5748158 ~ 5748714 (-)
G219500 NA other downstream 644677 5687725 ~ 5688291 (-)
G219290 LOC106593286 other downstream 1323562 5008084 ~ 5009406 (-)
G219200 NA other downstream 1560917 4770350 ~ 4772051 (-)
LOC110507902 LOC106593870 other upstream 147687 6479543 ~ 6491729 (-)
LOC110508304 gtpbp10 other upstream 591178 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 609985 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 613746 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 628268 6967081 ~ 6970500 (-)

Expression


Co-expression Network