G219970 (fam171a1)


Basic Information

Item Value
gene id G219970
gene name fam171a1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6603182 ~ 6607008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250920
CCAGTTTGTCTCTTTATTCAGAACAATAAGCGTAAATTATAATACAGGCAAACGGTTAAGACATTCAGAATGGATGGAACAGTAACATACAGTACTCTCCCAGAGTGGTTACTATGGTGATGGAgtacagcgcgagagagagagagagagagagagagaggggatgaagggTCATTCACAACACTAGCTCACATGTCAACATGTAGAGGAGAGAACTATATACACTGTAATGCCTCAGATGTCATAtgctgtcatacacacacacacacacacagtatattgtCTGCACGCACAGATATGAACACTCAGGCACATGCTTGTGCAGAAAGACATGACTACAGACAAAGACGGGCccacacactggcacacagagGCAGATGCAAAAGTCAATAAACAATCTAGCTATGGCCACACAGCATCCTCCCTTTgtgactgaggagaggagagagggggatgctgTATGCTGTCTgccagggacagagggaggagaggagagagggggttgcTGCATGGTCTgccagggacagagggaggagaggagagagggatgaggtagTGGAGGGTTAGAGCtcaacaggggagaggagaaatacATAGCTAGCTGAACTGATGTGTACGAGTCAacttgttcaaaggcacttggAAAACGAGGAAGTCGATTATAGTGGTTTCCAAACGTCAGGATGCGGTTTGGTTTCAGAGAAAAGGCTTGGGTGTGTGTCTGTTAAAACTCTGTACTTACAGTAAGGGAAAAAAACCGATAAAACATATCTGAGTAGAAAATAGCATAAACGTATTTGAGTAAAATAGTTTGGCAACTAAAATCACAGAGTACTTAAAATTACAAAACAAGCCATCTCAAGCAACTGTATAAAAGTGATGCATAGCCAGCCGTTCAGAGCAAAGTATGCCGAAGTCAGTGGTTCAACACACAAAACCTTCATTTAAAACTTCACTGGTAGAGTGCTGCAATATCAACAGTCACCAACAGAGGGGGCTGTATCCCATTATCTGATTCACCAGTCGTGTGGATGGGAAACTGAAgttacacacacactaatctAAGGTACCCTAATGTTGGAAAATTGAAACCTAACAAAATATGTTTTAGtgtcacatacactggatagatgcagccatagtagtacggcgcccctggagcaaatcagggttaagtgccttgctcaagggcacatcgacagatttttcaccgtCTTGGcttgggtattcgaaccagcgatCTTTGCGTTACTGGCCCAccgctctaactgctaggctacctgccgcccaaattaAGACCTGTGGGGGGAAAACTGATCGTAGATCTGTGCAGCATTATACATTAGAGTAGCTTCCTTTCCTGCTGTATGTATATCCTGTCCTAGTTACTGATCTGAAAACACTACTACTCTTTCTACCTAGACCTGCCAGTAGACCTGCCAGTAGACCTGCCAGTAGACCTGCCAGTAGACATCCACCATATTGCTTTGGCTTTATTCCACAGCCCCTGTTTGCTGACGCAGCTCATTTACTAAAGGCATAGCAGTTGTGCATTACATGTTCTCTGGCGTTGTTAAGTTTGTTTTTAGTTCATCTGTATCACTCAGACAAAGTCTCTATGGCATGTCTAGTCAGTGGCCTGTCCATGTAGTGTGGGGCTATGATGATACACAGGAAGGATTAGACATTAGAATGTATGGAGTTCCAACTGTTCCAATCGTTTCCATTCACTGACAGTTCCATTTAGCTCCCAGTACAGATGTACTTCCTGAATGATCTGGATCTATAGCTGGCCAATCCTTCTTCATGTCACTCTGGGGTggggtggtgggaggggaagTAAAGTTATAGTTCAAGGGTCAGAGGTTATTTGAGGTTAAAGACTGCCAATAGCGGGCGCTCCTCCCTCTTCTGCCAggggctcttcttctcctcctcctcctcctctccgtgGTCATCAGGGGCAACAGACAATAGGGCCGGTTGGTCATGCTCAGTCCTGAAGACCACGCCCTCGGTCTCTGTGAgtgggggtggagaggaggaggagggggaggagaggggtgaaggagCCTCTTCCTgtatcatcccctctcctctgtcctcctgctcTACTTGTTGATGTCCCTGTGTGTTCTGCAACCCTGGACCTAAAGGGCTGTCCTGGGGGCTACACTCAGGAGTCTCCCCCTCCAGGTCATCCACATATACCAGCTGGGTGTAGGCCATGGCAGGAGGGCCACTCtttgtcctccccctctctctgtctttctctctttccctctctcctaccttcctctctacctccctccccctccgcCCTGCTCTGGGCTCATTCAGGTCCACCCCGGAGTCCAGACTTGCATCGTTTCCGTTGACATGTCTACCACCACTGTTGTTACCATGGCTACCTCCTCCACCTGGATTCCCCTTGGCTTGCCCAGCCCGCTGCAAGTCTATGTAAGAGTGTCTGATGGCGTTAGACCGACCGTCCAATGAGACGAACCAGGCGCGCGGGTGTGTGAGGGGCTTCCCTCCCCGCAGTTCCATCAATTTCCTCTCAGCCAATAGTGTGTCCTCGCCGTTCATTTGCATAATCCCTGACTGCCCAAGTGCTGACGGGATAGACAGGGACTCTGATAGGCTGCTCCACTCCCCTTGCCCCTCTCCTTGTCCCTGGTTGGCTGAGGCAATAGCATAATCGGCGTGTGTTTGCCCCAGGGGCTGCTGGGAGTGTGAGGCGTTGAGCTCAGCCTGGATGGTCTCCAGGTCACTCTGCTGGTCAGTCTGTAAGAACAGGGCCTGGCCACACAGCGGGTGCTCCCCCGGCAGGCGCATGTAGTGGGCTGGGATCACCAGGGTGGGCCGGATCCTCCTGGGGTAACCGTCTCCTCCACTCAGCAGGTCCACGGAGCCACAACACAGCAGCTGGCCCGgcctggggagggagaggggcagggagccCAGGTGGTCCACAGACCGGGACAGGAGGTAGTCTGGGGGTCTGCGCTCACACCCCTCCCCTCTGATAGGGGAGACAGGTGGGGAGCAGGGCGAGGTAGCCTCACGCACACTAGTCCCGCCCTCCCCAACACCACTCAATTGACTTGCTGACGCCTGCACCTGATTTGAGGAGGAAAGTCTATCTGGGAGCTGATTGATGGATGAGCAGATGGAGGTGTATGATTGGCGGTAGCCGGCATCCGTCCCGGCGGAGAGGGCTGACTTAAACGGGAACGTCTCCACAGACTGACGGTAATCTCTGCTGCGCGGCGTCAGGTTGCCTAGCGACGAGCCATGACGACTTCGGCTGTGGTTTCCTAGAGACATGCGACTGTGGTTGCCATGGGAGACCAGGTCATGGCGATCGCAGGAGGAGGGTTTGAGCATGGGCGTGGTCATGTCGGGTTCTGCTGTCGTAGAGACCAGCTCC

Function

symbol description
fam171a1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

NR:

description
protein FAM171A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250920 True 3433 lncRNA 0.42 2 6603182 6607008

Neighbor

gene id symbol gene type direction distance location
LOC110508127 NA coding downstream 52784 6527175 ~ 6550398 (-)
cf191 cf191 coding downstream 103602 6496695 ~ 6499580 (-)
LOC110507902 LOC106593870 coding downstream 111453 6479543 ~ 6491729 (-)
epb41l4b LOC106605949 coding downstream 123774 6454833 ~ 6479408 (-)
LOC110508108 NA coding downstream 133048 6468351 ~ 6470134 (-)
LOC110507876 rpp38 coding upstream 15163 6622171 ~ 6623967 (-)
LOC110507843 LOC106576069 coding upstream 49505 6656513 ~ 6656888 (-)
LOC110507788 LOC106574611 coding upstream 107235 6714243 ~ 6744673 (-)
LOC110507764 LOC106576048 coding upstream 169473 6776481 ~ 6794278 (-)
LOC118945258 NA coding upstream 259017 6862876 ~ 6869053 (-)
G219822 NA non-coding downstream 196114 6344657 ~ 6407068 (-)
G219847 NA non-coding downstream 216973 6385989 ~ 6386209 (-)
G219819 NA non-coding downstream 271188 6327177 ~ 6331994 (-)
G219811 NA non-coding downstream 303356 6299330 ~ 6299826 (-)
G219988 LOC100136012 non-coding upstream 31932 6638940 ~ 6642155 (-)
G219999 NA non-coding upstream 52737 6659745 ~ 6660111 (-)
G219933 NA non-coding upstream 105172 6712180 ~ 6783455 (-)
G219952 NA non-coding upstream 166354 6773362 ~ 6774340 (-)
G220056 NA non-coding upstream 208678 6815686 ~ 6815896 (-)
LOC110534138 LOC106605946 other downstream 261569 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 264369 6332968 ~ 6338813 (-)
G219592 NA other downstream 851088 5751724 ~ 5752094 (-)
G219591 NA other downstream 854468 5748158 ~ 5748714 (-)
LOC110508304 gtpbp10 other upstream 322983 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 341790 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 345551 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 360073 6967081 ~ 6970500 (-)
LOC110508339 NA other upstream 381974 6988898 ~ 6993845 (-)

Expression


Co-expression Network