G219988 (LOC100136012)


Basic Information

Item Value
gene id G219988
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6638940 ~ 6642155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250944
GCAAATATTAGGGGGTTTATTTTCCCAAACTTGAAATTGTTTACAAAGAGAAGATAAAAACCATAGTGCATAAAAAGTACTTAAAAGGTCTGTAAATGAATGAAAGTAAAAGTGTTCTAACAACTAAAACATAGATAAATGTATAATTGAGGTCTACACAGCAGAACCAACTTCTTCTTCAAGGTTTATTGGCAGACTAGTttcaatgtcacatgcacaatGAAATGTCTTGCAAgctctaaccaacaatgcagtagtcAATAACAAATGTAATACTGAATATAACAAGGTAAAACAAAAACATGAGAAATAAGAACACAAAAAAGTAAGCAAGCAGTttcagtaccatatttacaatgggCAGGGACACTGTAGTGataggtagatgtgtatagggttAAGGTGACAAGGCATCGGGATATAAGAAACAGTCCCAgcagcacatacagtggggagaacaagtatttgatacactgccgattttgctggttttcctacttacaaaacatgtagagagaggtctgtcatttcagaaaaatccagaaaatcacattgtatgatttttaagtgattaatttgcattttattgcatgacataggtatttgatcacctaccaaccagtaagaattccggctctcacagacttgttagtttttctttaagaagccctcctgttctccactcattacctgtattaactgcacctgtttgaactcgttacctgtataaaagacacctgtccacacactcaatcaaacagactccaacctctccacaattgcCAAGAccagagctgtgtaaggacatcagggatataattgtagacctgcacaaggctggcttgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggtgcaattattagaaaatggaagaagttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattagtaacacactacaccgtcatggattaaaatcctgcagcgcacgcaagAGTTAGTTACCTCACAATATCAACTGTTAATCCTGAAATACCAACCTGGGTGTTCTGTGGCTCTTCCCCATTTCCTCTGTGTGTTGTCTGGAAAACAGACTGGTTGCTTGCCCATGTCCTGAGGTTGTTGCAGCTCTGGCAGTGTTGGGTCACAGCATGTCCTG

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250944 True 1297 lncRNA 0.41 2 6638940 6642155

Neighbor

gene id symbol gene type direction distance location
LOC110507876 rpp38 coding downstream 14973 6622171 ~ 6623967 (-)
LOC110508127 NA coding downstream 88542 6527175 ~ 6550398 (-)
cf191 cf191 coding downstream 139360 6496695 ~ 6499580 (-)
LOC110507902 LOC106593870 coding downstream 147211 6479543 ~ 6491729 (-)
epb41l4b LOC106605949 coding downstream 159532 6454833 ~ 6479408 (-)
LOC110507843 LOC106576069 coding upstream 14358 6656513 ~ 6656888 (-)
LOC110507788 LOC106574611 coding upstream 72088 6714243 ~ 6744673 (-)
LOC110507764 LOC106576048 coding upstream 134326 6776481 ~ 6794278 (-)
LOC118945258 NA coding upstream 223870 6862876 ~ 6869053 (-)
LOC110508277 cld12 coding upstream 259323 6901478 ~ 6905286 (-)
G219970 fam171a1 non-coding downstream 31932 6603182 ~ 6607008 (-)
G219822 NA non-coding downstream 231872 6344657 ~ 6407068 (-)
G219847 NA non-coding downstream 252731 6385989 ~ 6386209 (-)
G219819 NA non-coding downstream 306946 6327177 ~ 6331994 (-)
G219999 NA non-coding upstream 17590 6659745 ~ 6660111 (-)
G219933 NA non-coding upstream 70025 6712180 ~ 6783455 (-)
G219952 NA non-coding upstream 131207 6773362 ~ 6774340 (-)
G220056 NA non-coding upstream 173531 6815686 ~ 6815896 (-)
G219936 NA non-coding upstream 174130 6816285 ~ 6816505 (-)
LOC110534138 LOC106605946 other downstream 297327 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 300127 6332968 ~ 6338813 (-)
G219592 NA other downstream 886846 5751724 ~ 5752094 (-)
G219591 NA other downstream 890226 5748158 ~ 5748714 (-)
LOC110508304 gtpbp10 other upstream 287836 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 other upstream 306643 6948445 ~ 6952369 (-)
G220202 LOC106605995 other upstream 310404 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 324926 6967081 ~ 6970500 (-)
LOC110508339 NA other upstream 346827 6988898 ~ 6993845 (-)

Expression


Co-expression Network