G219933


Basic Information

Item Value
gene id G219933
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6712180 ~ 6783455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250881
cgcaaagttcaagggggccgaatactttcgcaaggcactgtatttccacactatcaGGTTGGAATAACATAGTACACAAAATAACTGCACTACACTGCATTTGCACTCTGTTCATCGCTCTGCATTTAGATATATTCATACTGATACTGTAAAATTGTACATCCACTGTATGTCATCTGTATACCAACTTATGTATTTTCACACTATGAGATAATAAAGGTGATTctaaaattgtgaaaatgatgataatgcccttttagtgtaagagctgtttgaaaagcctGCCTGGAAATTTCTGCCTGCTTTGGTGGGATggcgttttggcctgcctggtgacatcaccaggcataCATTGGTTTattgaccaataagaaagagttcaaAAACTCTCtgacaataacagctagtttttagTTTTCCCCACTccgacagtcctagcaaaattctcgcttgagaaattgctcttcgctaacaagttatttttatttttaaaattacaattttaattgaaaacaatcacagtaaggtacttaattgttacccagaaatgattttatattgcgataaaaaacagctgcattggacctttaatgtTGAGAGGAATTCTTTTTTAAATGATCATGAGATGTGGCCTTCCAAACTGTCTCTGTGCTATGCTCATGCTACTGGAAGTGCCTGAGGTATTTGAAAGGACCAAAGAGTTCCTGAATGTTTTGTTTACCTTAACTGAAGGTAATATGTTGagtgatatacacacacacacacacacagctgagggTTGGGGCTCAAGCACTAACAGTATATTGATACAAACCACGTTCCTGTTTCTACGTTGCACTGAATTAACTGACCTCTGCttgggtatgtactgtatgtatgcatgaCTTTTTTCCTTATGTAAACAGGTATCATTAATAAAGATGTTTTATTTGAATATTTGGGCTCATGACATGATTCAATCACTTTGATTTGTCAGTTCAATCAC
>TU250878
cgcaaagttcaagggggccgaatactttcgcaaggcactgtatttccacactatcaGGTTGGAATAACATAGTACACAAAATAACTGCACTACACTGCATTTGCACTCTGTTCATCGCTCTGCATTTAGATATATTCATACTGATACTGTAAAATTGTACATCCACTGTATGTCATCTGTATACCAACTTATGTATTTTCACACTATGAGATAATAAAGGTGATTctaaaattgtgaaaatgatgataatgcccttttagtgtaagagctgtttgaaaagcctGCCTGGAAATTTCTGCCTGCTTTGGTGGGATggcgttttggcctgcctggtgacatcaccaggcataCATTGGTTTattgaccaataagaaagagttcaaAAACTCTCtgacaataacagctagtttttagTTTTCCCCACTccgacagtcctagcaaaattctcgcttgagaaattgctcttcgctaacaagttatttttatttttaaaattacaattttaattgaaaacaatcacagtaaggtacttaattgttacccagaaatgattttatattgcgataaaaaacagctgcattggacctttaatgtTGAGAGGAATTCTTTTTTAAATGATCATGAGATGTGGCCTTCCAAACTGTCTCTGTGCTATGCTCATGCTACTGGAAGTGCCTGAGGTATTTGAAAGGACCAAAGAGTTCCTGAATGTTTTGTTTACCTTAACTGAAGGTAATATGTTGagtgatatacacacacacacacacacagctgagggTTGGGGCTCAAGCACTAACAGTATATTGATACAAACCACGTTCCTGTTTCTACGTTGCACTGAATTAACTGACCTCTGCttgggtatgtactgtatgtatgcatgaCTTTTTTCCTTATGTAAACAGGTATCATTAATAAAGATGTTTTATTTGAAT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU250881 False 985 lncRNA 0.41 2 6712180 6783455
TU250878 True 935 lncRNA 0.37 2 6712230 6783455

Neighbor

gene id symbol gene type direction distance location
LOC110507843 LOC106576069 coding downstream 55292 6656513 ~ 6656888 (-)
LOC110507876 rpp38 coding downstream 88213 6622171 ~ 6623967 (-)
LOC110508127 NA coding downstream 161782 6527175 ~ 6550398 (-)
cf191 cf191 coding downstream 212600 6496695 ~ 6499580 (-)
LOC110507902 LOC106593870 coding downstream 220451 6479543 ~ 6491729 (-)
LOC118945258 NA coding upstream 82570 6862876 ~ 6869053 (-)
LOC110508277 cld12 coding upstream 118023 6901478 ~ 6905286 (-)
LOC110508304 gtpbp10 coding upstream 146002 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 coding upstream 164990 6948445 ~ 6952369 (-)
LOC118944481 LOC106575260 coding upstream 169701 6953156 ~ 6953874 (-)
G219999 NA non-coding downstream 52069 6659745 ~ 6660111 (-)
G219988 LOC100136012 non-coding downstream 70025 6638940 ~ 6642155 (-)
G219970 fam171a1 non-coding downstream 105172 6603182 ~ 6607008 (-)
G219822 NA non-coding downstream 305112 6344657 ~ 6407068 (-)
G220056 NA non-coding upstream 32231 6815686 ~ 6815896 (-)
G219936 NA non-coding upstream 32830 6816285 ~ 6816505 (-)
G220063 NA non-coding upstream 40454 6823909 ~ 6824217 (-)
G220064 NA non-coding upstream 41520 6824975 ~ 6825213 (-)
G220074 NA non-coding upstream 57067 6840522 ~ 6842132 (-)
LOC110534138 LOC106605946 other downstream 370567 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 373367 6332968 ~ 6338813 (-)
G219592 NA other downstream 960086 5751724 ~ 5752094 (-)
G219591 NA other downstream 963466 5748158 ~ 5748714 (-)
G220202 LOC106605995 other upstream 169104 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 183626 6967081 ~ 6970500 (-)
LOC110508339 NA other upstream 205527 6988898 ~ 6993845 (-)

Expression


Co-expression Network