G219952


Basic Information

Item Value
gene id G219952
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6773362 ~ 6774340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU250900
TCATATGCATATTGCATTGTAACATTACTTAAACAAAGCTTTGAAGAAACAGCAGAGCTTAACTTCTTTAAATCCCTCCAGCTGCTGTGCATTTACGTGTGATTTTAATGATTGCACACAAAATTGGATGGATTTATGAGATCACATTCTGATCAATCTAAACAAAACAAGGCCTTAGAAAAATGTTGCTTTTCAAAAGAGAACATCAAGGCTGTACAAGTACGACAGGGTAGCTGAATATGATAAGGACCTCTTCTACACTAGACATTTGCTAGGAGAGAATGATCCTGTTATAGTGAATGTACTGTGTATGTTAGTTGATATTTTGTATCGTACCTTGCGATCCAGAGCTGCCTCATCTACTGGGATACAGTCATGTGTTTGTTTACTTGAACCCTCACACACCGAACAGATCGGCTCTTCATGCTCCAGACAGAACAGTGTGAGTAGCTTGCTGTGTAGACTGCAGACATGTTTTTTAACTGAAACTCTCACCCGGCATACACAGGTTCTTCAGAGCAAGATCCATCGAATCCTTATAGCATTTTATGCTGCACACTGGACATTCCCATGATTCCATCTGTTTCCAGTATGACTCCAGACAGGCTATACAGCAGCTATGGCCACAGGACAGGAGAACAGGTTCCGTGAGGGTTTCAGAGCGCACAGGACAACAGGTTCCTTGAGGGTTTCAGAGCGCACAGGACAACAGGTTCCTTGAGGGTTTGTGAGCGCACAGGACAGGAGAGATCTTTCTCTGGGACAGATGCCTGGGAGGCCATTTTGTCACTCCCTAATGGCATTTGGAGTGAGGTTACTTTCAATGTGAAAACTCACCCTGGTTTAGTCAGCAGCTTTCTTACCACAGTGTTGATGAATAGTTTTGCAGTTGTAGTTAGAAGACACAGGACTCAAACTATCTTACAGAACAGATACACAAAGAT

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU250900 True 944 lncRNA 0.32 2 6773362 6774340

Neighbor

gene id symbol gene type direction distance location
LOC110507788 LOC106574611 coding downstream 28689 6714243 ~ 6744673 (-)
LOC110507843 LOC106576069 coding downstream 116474 6656513 ~ 6656888 (-)
LOC110507876 rpp38 coding downstream 149395 6622171 ~ 6623967 (-)
LOC110508127 NA coding downstream 222964 6527175 ~ 6550398 (-)
cf191 cf191 coding downstream 273782 6496695 ~ 6499580 (-)
LOC110507764 LOC106576048 coding upstream 2141 6776481 ~ 6794278 (-)
LOC118945258 NA coding upstream 91685 6862876 ~ 6869053 (-)
LOC110508277 cld12 coding upstream 127138 6901478 ~ 6905286 (-)
LOC110508304 gtpbp10 coding upstream 155117 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 coding upstream 174105 6948445 ~ 6952369 (-)
G219999 NA non-coding downstream 113251 6659745 ~ 6660111 (-)
G219988 LOC100136012 non-coding downstream 131207 6638940 ~ 6642155 (-)
G219970 fam171a1 non-coding downstream 166354 6603182 ~ 6607008 (-)
G219847 NA non-coding downstream 387153 6385989 ~ 6386209 (-)
G220056 NA non-coding upstream 41346 6815686 ~ 6815896 (-)
G219936 NA non-coding upstream 41945 6816285 ~ 6816505 (-)
G220063 NA non-coding upstream 49569 6823909 ~ 6824217 (-)
G220064 NA non-coding upstream 50635 6824975 ~ 6825213 (-)
G220074 NA non-coding upstream 66182 6840522 ~ 6842132 (-)
LOC110507902 LOC106593870 other downstream 282347 6479543 ~ 6491729 (-)
LOC110534138 LOC106605946 other downstream 431749 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 434549 6332968 ~ 6338813 (-)
G219592 NA other downstream 1021268 5751724 ~ 5752094 (-)
G219591 NA other downstream 1024648 5748158 ~ 5748714 (-)
G220202 LOC106605995 other upstream 178219 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 192741 6967081 ~ 6970500 (-)
LOC110508339 NA other upstream 214642 6988898 ~ 6993845 (-)

Expression


Co-expression Network