G220134


Basic Information

Item Value
gene id G220134
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6954149 ~ 6954739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251128
agagatattagaggcagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtaga
>TU251129
agagatattagaggcagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagcagtagagatattagaggtagaagtgctactagtggtaacggtagtagtagggatattagaggtagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtaga
>TU251130
agagatattagaggcagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtaga
>TU251131
agagatattagaggcagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaacggtagtagtagggatattagaggtagaagtgctactagtagtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtaga
>TU251132
agagatattagaggcagaagtgctactagtggtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagcagtagagatattagaggtagaagtgctactagtggtaacggtagtagtagggatattagaggtagaagtgctactagtagtaatggtagtagcagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtagaagtgctactagtggtaatggtagtagtagagatattagaggtaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251128 False 249 lncRNA 0.43 2 6954149 6954739
TU251129 False 294 lncRNA 0.51 2 6954149 6954739
TU251130 False 204 lncRNA 0.50 2 6954149 6954739
TU251131 False 297 lncRNA 0.39 3 6954149 6954739
TU251132 True 339 lncRNA 0.39 2 6954149 6954739

Neighbor

gene id symbol gene type direction distance location
LOC110520781 osgin2 coding upstream 6173 6937600 ~ 6947976 (+)
LOC110508266 LOC106511201 coding upstream 24749 6828683 ~ 6929400 (+)
LOC110507732 LOC106576036 coding upstream 142855 6794547 ~ 6811294 (+)
LOC110507774 LOC106605985 coding upstream 177669 6773881 ~ 6777798 (+)
LOC110507743 LOC106605986 coding upstream 181085 6754839 ~ 6773064 (+)
LOC110508323 LOC106575347 coding downstream 24756 6979131 ~ 6988449 (+)
them4 LOC106592246 coding downstream 38328 6993067 ~ 6996424 (+)
LOC110520784 LOC106575322 coding downstream 61952 7016691 ~ 7045216 (+)
LOC100135938 LOC106575366 coding downstream 91996 7046735 ~ 7061832 (+)
LOC110508369 LOC106575371 coding downstream 108879 7063618 ~ 7079482 (+)
G219063 NA non-coding upstream 88498 6862939 ~ 6865651 (+)
G219026 NA non-coding upstream 137570 6816286 ~ 6816579 (+)
G219018 NA non-coding upstream 152217 6798368 ~ 6801932 (+)
G219017 NA non-coding upstream 152351 6797874 ~ 6801798 (+)
G220125 NA non-coding downstream 22265 6977004 ~ 6977467 (+)
G220178 NA non-coding downstream 124941 7079680 ~ 7079902 (+)
G220184 NA non-coding downstream 147559 7102298 ~ 7103268 (+)
G218971 NA other upstream 234986 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 322548 6624575 ~ 6631601 (+)
LOC110520771 fam171a1 other upstream 347140 6560989 ~ 6607009 (+)
LOC110536044 LOC106575458 other downstream 393553 7348131 ~ 7357408 (+)
G220435 NA other downstream 404929 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 423519 7378258 ~ 7381563 (+)
LOC118945274 LOC106575512 other downstream 491630 7437011 ~ 7447882 (+)

Expression


Co-expression Network