G220125


Basic Information

Item Value
gene id G220125
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6977004 ~ 6977467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251116
TTCCTAATGCTATCAAGAGAAAACAAATCAGTGGAATGCTAACAGAAAAAGAGAACAAAAAATACCCAGCTCTGCTCATCTCATCTTTGGGGCCTCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCGTCTGGTTTGGAGGCTTCTTTAGGAGAATCAGGTTTGGGAGCATCTGGTTTGGATTCTTCTGGTTTGGGGGCATCTGGTTTTGGAGCGGCCTCTTGTTTAGGCGGTTCATCTCCAC
>TU251117
TTCCTAATGCTATCAAGAGAAAACAAATCAGTGGAATGCTAACAGAAAAAGAGAACAAAAAATACCCAGCTCTGCTCATCTCATCTTTGGGGCCTCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCGTCTGGTTTGGAGGCTTCTTTAGGAGAATCAGGTTTGGGAGCATCTGGTTTGGATTCTTCTGGTTTGGGGGCATCTGGTTTTGGAGCGGCCTCTTGTTTAGGCGGTTCATCTCCAC
>TU251118
TTCCTAATGCTATCAAGAGAAAACAAATCAGTGGAATGCTAACAGAAAAAGAGAACAAAAAATACCCAGCTCTGCTCATCTCATCTTTGGGGCCTCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCGTCTGGTTTGGAGGCTTCTTTAGGAGAATCAGGTTTGGGAGCATCTGGTTTGGATTCTTCTGGTTTGGGGGCATCTGGTTTTGGAGCGGCCTCTTGTTTAGGCGGTTCATCTCCAC
>TU251119
TTCCTAATGCTATCAAGAGAAAACAAATCAGTGGAATGCTAACAGAAAAAGAGAACAAAAAATACCCAGCTCTGCTCATCTCATCTTTGGGGCCTCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCTTCTGGTTTGGGGGCAGCCTCTTGTTTAGGGGCTTCTTTAGGAGAATCAGGTTTGGGTTCGTCTGGTTTGGAGGCTTCTTTAGGAGAATCAGGTTTGGGAGCATCTGGTTTGGATTCTTCTGGTTTGGGGGCATCTGGTTTTGGAGCGGCCTCTTGTTTAGGCGGTTCATCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251116 False 404 lncRNA 0.53 2 6977004 6977467
TU251117 False 404 lncRNA 0.48 2 6977004 6977467
TU251118 False 284 lncRNA 0.39 2 6977004 6977467
TU251119 True 344 lncRNA 0.47 2 6977004 6977467

Neighbor

gene id symbol gene type direction distance location
LOC110520781 osgin2 coding upstream 29028 6937600 ~ 6947976 (+)
LOC110508266 LOC106511201 coding upstream 47604 6828683 ~ 6929400 (+)
LOC110507732 LOC106576036 coding upstream 165710 6794547 ~ 6811294 (+)
LOC110507774 LOC106605985 coding upstream 200524 6773881 ~ 6777798 (+)
LOC110507743 LOC106605986 coding upstream 203940 6754839 ~ 6773064 (+)
LOC110508323 LOC106575347 coding downstream 2028 6979131 ~ 6988449 (+)
them4 LOC106592246 coding downstream 15600 6993067 ~ 6996424 (+)
LOC110520784 LOC106575322 coding downstream 39224 7016691 ~ 7045216 (+)
LOC100135938 LOC106575366 coding downstream 69268 7046735 ~ 7061832 (+)
LOC110508369 LOC106575371 coding downstream 86151 7063618 ~ 7079482 (+)
G220134 NA non-coding upstream 22265 6954149 ~ 6954739 (+)
G219063 NA non-coding upstream 111353 6862939 ~ 6865651 (+)
G219026 NA non-coding upstream 160425 6816286 ~ 6816579 (+)
G219018 NA non-coding upstream 175072 6798368 ~ 6801932 (+)
G220178 NA non-coding downstream 102213 7079680 ~ 7079902 (+)
G220184 NA non-coding downstream 124831 7102298 ~ 7103268 (+)
G220185 NA non-coding downstream 126288 7103755 ~ 7103963 (+)
G218971 NA other upstream 257841 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 345403 6624575 ~ 6631601 (+)
LOC110520771 fam171a1 other upstream 369995 6560989 ~ 6607009 (+)
LOC110536044 LOC106575458 other downstream 370825 7348131 ~ 7357408 (+)
G220435 NA other downstream 382201 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 400791 7378258 ~ 7381563 (+)
LOC118945274 LOC106575512 other downstream 468902 7437011 ~ 7447882 (+)

Expression


Co-expression Network