G220242 (LOC100194679)


Basic Information

Item Value
gene id G220242
gene name LOC100194679
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7082745 ~ 7083691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251284
TCTGAGTCTACAGGGGCTCCTGTGTCCATGTCCATTGACTCTGCACCAAACTCTCCACCCTGCATGGACATCTGTAGAGCATAGGCAATCTGCTCGTCCTCCGTCATGCGGCTGAAGTCGGGCATAGCGGGCGTGGCCGTGTCAGCCTGGGGGACTGACATCTTCAGCAGAGCTTCGTCTGACTCGTCAGCGGTAGGCGAGGGAACCCCGGCCTCAGCAGCAGACACCACTGCTGCCCTGCGAGTCTCATCCTCCTGCCTTTGTCTCTGCTCCTCCATAGACACCCTCAGAGCCAGTGCCAGCTCTGGGTCTGCACTGGGGTCCACTCCAAACTCAAAGTCACTGGACCCCAGGCCCAGCATGGCTCCTCCCTCCCCAGCAAGgataggagaggacagtagggcaTCAGCCAGACTGGGGCCTGGAGGCACTGTCACAAGGTGGGACCCTGCTCCTTCCTTCCCATTCAGAGTGTTGATGAAGGCCGTCAGCTTTTCTGTGTTCACCTCCTGGAG
>TU251283
TCTGAGTCTACAGGGGCTCCTGTGTCCATGTCCATTGACTCTGCACCAAACTCTCCACCCTGCATGGACATCTGTAGAGCATAGGCAATCTGCTCGTCCTCCGTCATGCGGCTGAAGTCGGGCATAGCGGGCGTGGCCGTGTCAGCCTGGGGGACTGACATCTTCAGCAGAGCTTCGTCTGACTCTAGAACAGGAGGTGGTTAACAGTTTATCCACCCATATGCAGTGCCTCCCTTCAGGGAAGATCCAagtacagagaggggagagaga

Function

NR:

description
26S proteasome non-ATPase regulatory subunit 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251284 False 515 TUCP 0.60 4 7082745 7083691
TU251283 True 270 lncRNA 0.55 2 7083343 7083691

Neighbor

gene id symbol gene type direction distance location
LOC110508339 NA coding downstream 89498 6988898 ~ 6993845 (-)
zgc:174935 LOC106605997 coding downstream 104154 6976163 ~ 6979189 (-)
LOC118944481 LOC106575260 coding downstream 129469 6953156 ~ 6953874 (-)
LOC118964351 LOC106605995 coding downstream 130974 6948445 ~ 6952369 (-)
LOC110508304 gtpbp10 coding downstream 150682 6929457 ~ 6932661 (-)
il6r il6ra coding upstream 124230 7158585 ~ 7220080 (-)
LOC110520786 atp8b2 coding upstream 138305 7221996 ~ 7320978 (-)
LOC118945273 NA coding upstream 140435 7224126 ~ 7226076 (-)
LOC110536068 LOC106595411 coding upstream 239345 7323036 ~ 7343283 (-)
LOC110537383 LOC105024478 coding upstream 281726 7365417 ~ 7394499 (-)
G220253 LOC106575371 non-coding downstream 9773 7073142 ~ 7073570 (-)
G220229 LOC100135938 non-coding downstream 21512 7019976 ~ 7061831 (-)
G220226 NA non-coding downstream 66634 7016495 ~ 7016709 (-)
G220222 NA non-coding downstream 81864 7000432 ~ 7001479 (-)
G220217 NA non-coding downstream 94470 6988327 ~ 6988873 (-)
G220265 NA non-coding upstream 22245 7105936 ~ 7106163 (-)
G220270 NA non-coding upstream 29300 7112991 ~ 7113723 (-)
G220272 NA non-coding upstream 31912 7115603 ~ 7115892 (-)
G220278 NA non-coding upstream 34791 7118482 ~ 7118720 (-)
G220281 NA non-coding upstream 36596 7120287 ~ 7120503 (-)
G220209 LOC105030512 other downstream 112843 6967081 ~ 6970500 (-)
G220202 LOC106605995 other downstream 130380 6952559 ~ 6952963 (-)
G220261 NA other upstream 15647 7099338 ~ 7100170 (-)
G220751 NA other upstream 92701 7176392 ~ 7201421 (-)
LOC110520792 LOC106575505 other upstream 344979 7408252 ~ 7436195 (-)
LOC110508454 s10ag other upstream 433509 7517195 ~ 7524544 (-)
LOC110508472 LOC106573847 other upstream 444335 7528026 ~ 7530317 (-)

Expression


Co-expression Network