G220368 (atp8b2)


Basic Information

Item Value
gene id G220368
gene name atp8b2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7259535 ~ 7264660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251436
tccctctctctcagcctcgtttcatccctccctcctgctatctctcaccctccttcttctcctcactCATGACGGTGTGACAGAGGGAAAGCAGCCGGAAGAACTCGTGGCTGTGAAGGTCTCCCAGCTTCACCGACTTCAGCAGACCGTTGTCATAGTAACAGAAGTCAGGGTCCGCCAGGGGGTTGAAGGAAGAGAAGTCTAGCCTCTTTGGCTGTGCTCCCAACGGGTCGATCACCTCACCTGACAATAGAACACACTCACACTTAGACTCAGAGTTACCCAGCACCACAAGGACGTCTGCAACATTGACTGGGGGAACAGGACAGTGCTGATTTGAtctgatttgtgtgtgtattgttctaTTTCTATTTATTaagaatccccattagttcctgtcaaggcagcaactactcttcctggggtttattatggatccccattagttcctgtcaaggcagcaactactcttcctggggtttattatggatccccattagttcctgtcaaggcagcaactactcttcctggggtttattatggatccccattagttcctgtcaaggcagcaactactcttcctggggtttattaaaaatccccattagttcctgtcaaggcag
>TU251437
tccctctctctcagcctcgtttcatccctccctcctgctatctctcaccctccttcttctcctcactCATGACGGTGTGACAGAGGGAAAGCAGCCGGAAGAACTCGTGGCTGTGAAGGTCTCCCAGCTTCACCGACTTCAGCAGACCGTTGTCATAGTAACAGAAGTCAGGGTCCGCCAGGGGGTTGAAGGAAGAGAAGTCTAGCCTCTTTGGCTGTGCTCCCAACGGGTCGATCACCTCACCATAGGCATGTCCATTGATAGAGCACTTGCTGAAGCTCATGATGTTCTGAGTGAGAGTTCCTGTCTTGTCACTGAAGATGTACTCCACCTGTCCCAGTTCCTCGTTGAGAGTGGTGGTCCTGGCTTCAGCTGCTGTGTTACACTGTGGACAGAACATCTTCCTGTCCCAGTTTATAAAGTAACTATGACCCAGCCTAATCACCTCCACACTGACGTAGAGTGAGATGGGCACCACGGTGTTGAGAATGATGACGTAGGACCAGAAGGAGAGGAAAGCAGAGAACAGGAAGTTGTCTACAGGCAGGTCCCAGGCCAGGTAACTCTGGAACAGagaacccacctctctctcccacacagcgTTCCCCACAGCCAGGATCACACCCATACACACCATGAAGCCAAAG
>TU251438
tccctctctctcagcctcgtttcatccctccctcctgctatctctcaccctccttcttctcctcactCATGACGGTGTGACAGAGGGAAAGCAGCCGGAAGAACTCGTGGCTGTGAAGGTCTCCCAGCTTCACCGACTTCAGCAGACCGTTGTCATAGTAACAGAAGTCAGGGTCCGCCAGGGGGTTGAAGGAAGAGAAGTCTAGCCTCTTTGGCTGTGCTCCCAACGGGTCGATCACCTCACCATAGGCATGTCCATTGATAGAGCACTTGCTGAAGCTCATGATGTTCTGAGTGAGAGTTCCTGTCTTGTCACTGAAGATGTACTCCACCTGTCCCAGTTCCTCGTTGAGAGTGGTGGTCCTGGCTTCAGCTGCTGTGTTACACTGTGGACAGAACATCTTCCTGTCCCAGTTTATAAAGTAACTATGACCCAGCCTAATCACCTCCACActg

Function

symbol description
atp8b2 Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP8B2 (ATPase phospholipid transporting 8B2).

NR:

description
LOW QUALITY PROTEIN: phospholipid-transporting ATPase ID-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251436 False 623 lncRNA 0.39 2 7259535 7260375
TU251437 False 647 lncRNA 0.51 5 7259535 7264660
TU251438 True 455 lncRNA 0.42 4 7259535 7263988

Neighbor

gene id symbol gene type direction distance location
LOC110508415 LOC106605928 coding upstream 89092 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 145754 7109982 ~ 7113781 (+)
LOC110508380 LOC105029226 coding upstream 160630 7084606 ~ 7098905 (+)
LOC110508390 LOC100194679 coding upstream 175221 7080450 ~ 7084314 (+)
LOC110508369 LOC106575371 coding upstream 180053 7063618 ~ 7079482 (+)
LOC110536044 LOC106575458 coding downstream 83471 7348131 ~ 7357408 (+)
LOC118945274 LOC106575512 coding downstream 172351 7437011 ~ 7447882 (+)
LOC110508431 LOC106575520 coding downstream 195780 7460440 ~ 7500537 (+)
LOC110508507 LOC106575080 coding downstream 353708 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 676642 7941302 ~ 8086452 (+)
G220364 NA non-coding upstream 3523 7255218 ~ 7256012 (+)
G220361 NA non-coding upstream 8021 7250064 ~ 7251514 (+)
G220359 NA non-coding upstream 10347 7246462 ~ 7249188 (+)
G220350 LOC106595355 non-coding upstream 21807 7228413 ~ 7237728 (+)
G220352 NA non-coding upstream 30578 7209122 ~ 7228957 (+)
G220395 NA non-coding downstream 36016 7300676 ~ 7300897 (+)
G220403 NA non-coding downstream 41273 7305933 ~ 7306295 (+)
G220406 NA non-coding downstream 45915 7310575 ~ 7311140 (+)
G220407 NA non-coding downstream 46979 7311639 ~ 7312042 (+)
G220432 NA non-coding downstream 84178 7348838 ~ 7349576 (+)
LOC110508323 LOC106575347 other upstream 273013 6979131 ~ 6988449 (+)
LOC110520781 osgin2 other upstream 314556 6937600 ~ 6947976 (+)
LOC110507732 LOC106576036 other upstream 451865 6794547 ~ 6811294 (+)
G218971 NA other upstream 540372 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 627934 6624575 ~ 6631601 (+)
G220435 NA other downstream 95008 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 113598 7378258 ~ 7381563 (+)
LOC110520790 LOC106606111 other downstream 906047 8170634 ~ 8178058 (+)

Expression


Co-expression Network