G220397


Basic Information

Item Value
gene id G220397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7406440 ~ 7419394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251470
CTTCGATTGCCATGCAATATTTAATTCAATAGAAAACAGATTGGTATTGTGAAGTACAAATTCACAGCGTAAAATAACTAATCAGTAATCATGTACCACCTTCTGTACTCATAGTTACAACAAAGCCATACAGTATGGTAGTCTAGTGCTTCATATATACTAAACAGtaagtactgtatgtgtagggtaTAAGAAACACTAGAGCACCATATTCTATACAAAATATTTCAAGCCAACTGAACAGTTGGAAGATATGAACATTGCAGCAATATCACTTAGTGGTAACTACTGTATCACTGAATGAAAATACAAGCTCTCAGATCTCCCTCAAAACCAATTAAATAGAAACAAATCATTTAGAAAAATCTATCCAGAGTACACCGGAACAAGTACAACTGAAAATCATGCATTACAAAATCATTTAAACAACTTTTAAGGCATAGTGATTAAGATCTTCACAAGCTTCTCTGAGTATTAATTGTAAGGACTGCATAGAAGTTTACGGATGCTACAAATACAatgtgtaaagtgtgtgtgtatgaagaaATGGTGAGAGAGGATTGGTATCAGAGCAAACTCCATACATGCATCTGTAGTGGCAGGCAGTCAAGTAGTAGAACATACAGCAGAATAGGAATCAAACTGTCAGATATGGTTTCTAAAACAGTGATAACTATGACATCACATTCAGCAGAATATTGTTAATTTCATGAATTAGAAAAACTATCTACATTTGTTCATCATTCTCATATATCTGGCAGCATTTGGTCCAACTGTGTTTTAAAAAGTACACTTGCATATCAGATCTCCATTAAGGACTGGATGGAATAGTGTTTGCTGTGCATCAGGTCCGTGTGACAGGGCACCAGTAGGATCAGATGAAACACTGTTCACCCTGTGAAAGCAGACATTAACCAGCTACAGTGTTAAAtagtcacagtacatgttggcgtGGTTGCTTCTATCACTATTCAGTCAGTGTAATCATGTGACCAAACTCATTTTCACTAAGAGTAATATTGAAAAGAACCATAATAATGACCCTATTAAACAGTCCCACAGAGTAATTCTGTGTATTAAAGAGCACCATACTAATTACAGTATCATAGCATACCATAGAGTACCACAGAGGAATGATGAAATTAAAGAGTGCAACAGTGTATTGCCGTTTAGTCCTGTAAGTCATTGTAAGTGCTTTAGACAGTGAGTCATCCTGCCTGTTCTTCTCAGGGGTAGAATGTGTTGGTGTTCTGTTACTGTATTCATGTTTATTGTCTTGTATTCCTCCTGGACATCGGAGCTTATTCACCCCCACAATCCTCCTCTTCAGTACGACTAGGAGTCTACTGTCCAGCGCAGTGagtcatcctcctcatcctctccttctccctgaacctgtgatctctctctccccccctccctccctgaacctgtgatccctctctccccccctccctccctgaaccTGTGATCCCTCCTTTATACAGTGTTTTTATAGCAGGTCTATAGAGTGCTTAAAATACACCCTTTAATCCACCTTCCTCCGTCCCTCTATgctcctccttctccctttctctataGTGCTCAGAATAGCCcttgttctcctcctcctaccactACCCGCCACCCCCCTCCCTCTAGCAGGAGCTGGTGTGAAGGTTGCCACTACCCCCCCATCCCTCTAGCAGGAGCTGGTGTGAAGGTtgccactacccccccccccccccacccctctagcAGGAGCTGGTGTGAAGGTTGCCacaaccccccccctccctctagcAGGAGCTGGTGTGAAGGTTGCTCCCAGTGAGGATGGACGTGATGCTGGAGGGGTCGTACAGGCCTTCATCATCTTCGTCAGAGCTCAGAGCCGACGAGTCCAGGGCCTGACGCTGCGCCTGCTGCACCTTCCTCCTGAAACACACCACCATCAGCTTCAGAAATGTTATCTTCATTGTCTATTGTTCACTACAACAGAGGCTGTAGGTGGATCTCAGCAAACATGTGTGGGACAGTTGACTTCTACAGTAGACAGTGTGGTTCCCTGTAGTATCTGTCAGGGAGAGAGCCCTCTGCTGGTCAGATATGGGAACTGACTGGTGTGACATACAATACATACTGTGGGTCTGTAATTTTTGAAGTGTAccttttatcataggtacacttcaactgtgagggacggaatctaaaacaaaaat

Function

NR:

description
PREDICTED: cingulin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251470 True 2201 lncRNA 0.43 3 7406440 7419394

Neighbor

gene id symbol gene type direction distance location
LOC110536044 LOC106575458 coding upstream 49032 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 235997 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 292659 7109982 ~ 7113781 (+)
LOC110508380 LOC105029226 coding upstream 307535 7084606 ~ 7098905 (+)
LOC110508390 LOC100194679 coding upstream 322126 7080450 ~ 7084314 (+)
LOC118945274 LOC106575512 coding downstream 17617 7437011 ~ 7447882 (+)
LOC110508431 LOC106575520 coding downstream 41046 7460440 ~ 7500537 (+)
LOC110508507 LOC106575080 coding downstream 198974 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 521908 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 729013 8148407 ~ 8159396 (+)
G220445 LOC106575489 non-coding upstream 27638 7378258 ~ 7381563 (+)
G220437 NA non-coding upstream 39592 7365463 ~ 7366848 (+)
G220435 NA non-coding upstream 41155 7359668 ~ 7365285 (+)
G220432 NA non-coding upstream 56864 7348838 ~ 7349576 (+)
G220475 LOC106575505 non-coding downstream 8691 7428085 ~ 7429111 (+)
G220476 NA non-coding downstream 10250 7429644 ~ 7430128 (+)
G220513 LOC106613263 non-coding downstream 70760 7490154 ~ 7490423 (+)
G220518 NA non-coding downstream 75650 7495044 ~ 7495322 (+)
G220527 NA non-coding downstream 92657 7512051 ~ 7513038 (+)
LOC110508323 LOC106575347 other upstream 419918 6979131 ~ 6988449 (+)
LOC110520781 osgin2 other upstream 461461 6937600 ~ 6947976 (+)
LOC110520790 LOC106606111 other downstream 751313 8170634 ~ 8178058 (+)
G221299 s10i other downstream 979677 8399071 ~ 8489067 (+)
G221514 NA other downstream 1309583 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1341940 8715996 ~ 8766590 (+)

Expression


Co-expression Network