G220463 (LOC106575505)


Basic Information

Item Value
gene id G220463
gene name LOC106575505
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7410342 ~ 7412750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251552
gtgtgtttgaatccGACTGCTTTATTCTGTAATGACGTGTGTCTGATAGCAGCATCTCTGTTGAGGGATCAGAGAGGAGCTCAGTGATCCATAGAATGATACACAACACACACCGCACGCTAGTTTGGTTGTGGGGAGTGAACAGGCTGCCAGTAAATGTCAGCTCACTGAACTCATTACCAATGACAAGAGGAACAGAAAGAGgtctggagggagtggaggagaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaagagaacagaggaacagagagaattGGGCTGGTTCAGAAGAAGAGCCACATCTAGGAGAAAGGAGATACTTAGTCATCTAACATGTGAAACAGGTAGAGTGTCAGACTtggaaacacaacacacagacttACTTGAGCTCAGTCTCCAGCGCGGTGACTCTGCCCTGTAAGGCCTCCTTTAGTTCCAtctgttcctccatctctctctgggcCTTCCTCctcaatccctccatcctctctaccTCGGTCTCCCCCTCATCCACCTGTCTCTTCAGAGCCTTCACACGCAGAGACAGCTACAACACAGAGGAAtcagtcagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgtacctggtctctctgttctgtgtgttggtgtctctcTTCCTCCAGGGTAAAGTTGAGCTCCTTCAGTTTCTTCTCCAGGCGACGCTGAGACGACAACATGGAGTTCttctccctaacacacacacacacacacacacacgtttagcaCAAACATAAACAAGGTGATTCTGGATACAGTGACCAGTTCATAATATCATAAGCTTTACTTGTCATCAATAATGTGAATGTCAATTTAAGGTACACTTCTCTAACTAATAGTGAACTACCATACCAAACACAAAATCAGCTTTTGTTACAAAATATCATATTCCAGACTATGTGGTGCATTAGTTCCGTCTGTAGTTCCTGGGGTGTTCCTGGGGTGTTCCTGGGGTGTGGTGCATTGTGGGACGTGTAGTGTGCGGTGTACCTATCCTCACTGTGGAGGCGTTCCTCCAACTCGTGAACTTTACTCTCCAGCTGAGCCACTCCTACAGAGGAGCGAGACTGACCCTCCATATCAGATACTCTGGTCTTCAACTCCTTCATCTGGACAGAGAGATTTAAGCATAATCAATCATCACTCAGACCTTAAGATCATTTCAGTGGAGACACAGACTTAACGTACATGTCTTTCTAGGGCATTCTTGTCCAGCTCCAGGTCCTGTCTGGAGGATCTCTCCTGCATCAGCTCTGAACGCAGCTGCTCCAtctgcacacagacagacagaggagcgccagacagaggaacaacagacagggtgaggggaGAGTTAACAAATACATTATTTTCCTAGCTTGGTCCTGGTTCTTTCAACTGTTAACCAACAGACTGGTGAAagtgtgtgtgtgtacctggtctcTGGTCCTGGTTCTTTCAACTGTTAACCAACAGACTGGTGAAAgtgtgtgtgtgtgtgtacctggtctcTGGTCCTGGTGACTCTGTCAGTGAGTAGCTCCACagatcccttctcctcctccagctccagctccagtcGTTTCATCTTGTCCTCCGTGCTGCGGAGCTCCCTGCTCTTGTCTGTGAGGCTGCTCCTGCTGTTCTCCAGTTCAGCCTCTAGGTGGTGCAGGCGGTTGGTGAGCAGCTCCTTGTCCAGCTGAACATTGTCTCTCTCCTCAACCACAGAGAGCAGCTCCTTCTTCTGACGGGACGCCTGgcgca
>TU251551
ggagaacagaaagaggtctggagggagtggaggagaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaagagaacagaggaacagagagaattGGGCTGGTTCAGAAGAAGAGCCACATCTAGGAGAAAGGAGATACTTAGTCATCTAACATGTGAAACAGGTAGAGTGTCAGACTtggaaacacaacacacagacttACTTGAGCTCAGTCTCCAGCGCGGTGACTCTGCCCTGTAAGGCCTCCTTTAGTTCCAtctgttcctccatctctctctgggcCTTCCTCctcaatccctccatcctctctaccTCGGTCTCCCCCTCATCCACCTGTCTCTTCAGAGCCTTCACACGCAGAGACAGCTACAACACAGAGGAAtcagtcagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgtacctggtctctctgttctgtgtgttggtgtctctcTTCCTCCAGGGTAAAGTTGAGCTCCTTCAGTTTCTTCTCCAGGCGACGCTGAGACGACAACATGGAGTTCttctccctaacacacacacacacacacacacacgtttagcaCAAACATAAACAAGGTGATTCTGGATACAGTGACCAGTTCATAATATCATAAGCTTTACTTGTCATCAATAATGTGAATGTCAATTTAAGGTACACTTCTCTAACTAATAGTGAACTACCATACCAAACACAAAATCAGCTTTTGTTACAAAATATCATATTCCAGACTATGTGGTGCATTAGTTCCGTCTGTAGTTCCTGGGGTGTTCCTGGGGTGTTCCTGGGGTGTGGTGCATTGTGGGACGTGTAGTGTGCGGTGTACCTATCCTCACTGTGGAGGCGTTCCTCCAACTCGTGAACTTTACTCTCCAGCTGAGCCACTCCTACAGAGGAGCGAGACTGACCCTCCATATCAGATACTCTGGTCTTCAACTCCTTCATCTGGACAGAGAGATTTAAGCATAATCAATCATCACTCAGACCTTAAGATCATTTCAGTGGAGACACAGACTTAACGTACATGTCTTTCTAGGGCATTCTTGTCCAGCTCCAGGTCCTGTCTGGAGGATCTCTCCTGCATCAGCTCTGAACGCAGCTGCTCCAtctgcacacagacagacagaggagcgccagacagaggaacaacagacagggtgaggggaGAGTTAACAAATACATTATTTTCCTAGCTTGGTCCTGGTTCTTTCAACTGTTAACCAACAGACTGGTGAAAgtgtgtgtgtgtgtgtacctggtctcTGGTCCTGGTGACTCTGTCAGTGAGTAGCTCCACagatcccttctcctcctccagctccagctccagtcGTTTCATCTTGTCCTCCGTGCTGCGGAGCTCCCTGCTCTTGTCTGTGAGGCTGCTCCTGCTGTTCTCCAGTTCAGCCTCTAGGTGGTGCAGGCGGTTGGTGAGCAGCTCCTTGTCCAGCTGAACATTGTCTCTCTCCTCAACCACAGAGAGCAGCTCCTTCTTCTGACGGGACGCCTGgcgca
>TU251553
ggagaacagaaagaggtctggagggagtggaggagaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaggagaagagaggaacagaaagaggtctggagggagtggaagagaacagaggaacagagagaattGGGCTGGTTCAGAAGAAGAGCCACATCTAGGAGAAAGGAGATACTTAGTCATCTAACATGTGAAACAGGTAGAGTGTCAGACTtggaaacacaacacacagacttACTTGAGCTCAGTCTCCAGCGCGGTGACTCTGCCCTGTAAGGCCTCCTTTAGTTCCAtctgttcctccatctctctctgggcCTTCCTCctcaatccctccatcctctctaccTCGGTCTCCCCCTCATCCACCTGTCTCTTCAGAGCCTTCACACGCAGAGACAGCTACAACACAGAGGAAtcagtcagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgtacctggtctctctgttctgtgtgttggtgtctctcTTCCTCCAGGGTAAAGTTGAGCTCCTTCAGTTTCTTCTCCAGGCGACGCTGAGACGACAACATGGAGTTCttctccctaacacacacacacacacacacacacgtttagcaCAAACATAAACAAGGTGATTCTGGATACAGTGACCAGTTCATAATATCATAAGCTTTACTTGTCATCAATAATGTGAATGTCAATTTAAGGTACACTTCTCTAACTAATAGTGAACTACCATACCAAACACAAAATCAGCTTTTGTTACAAAATATCATATTCCAGACTATGTGGTGCATTAGTTCCGTCTGTAGTTCCTGGGGTGTTCCTGGGGTGTTCCTGGGGTGTGGTGCATTGTGGGACGTGTAGTGTGCGGTGTACCTATCCTCACTGTGGAGGCGTTCCTCCAACTCGTGAACTTTACTCTCCAGCTGAGCCACTCCTACAGAGGAGCGAGACTGACCCTCCATATCAGATACTCTGGTCTTCAACTCCTTCATCTGGACAGAGAGATTTAAGCATAATCAATCATCACTCAGACCTTAAGATCATTTCAGTGGAGACACAGACTTAACGTACATGTCTTTCTAGGGCATTCTTGTCCAGCTCCAGGTCCTGTCTGGAGGATCTCTCCTGCATCAGCTCTGAACGCAGCTGCTCCAtctgcacacagacagacagaggagcgccagacagaggaacaacagacagggtgaggggaGAGTTAACAAATACATTATTTTCCTAGCTTGGTCCTGGTTCTTTCAACTGTTAACCAACAGACTGGTGAAagtgtgtgtgtgtacctggtctcTGGTCCTGGTTCTTTCAACTGTTAACCAACAGACTGGTGAAAgtgtgtgtgtgtgtgtacctggtctcTGGTCCTGGTGACTCTGTCAGTGAGTAGCTCCACagatcccttctcctcctccagctccagctccagtcGTTTCATCTTGTCCTCCGTGCTGCGGAGCTCCCTGCTCTTGTCTGTGAGGCTGCTCCTGCTGTTCTCCAGTTCAGCCTCTAGGTGGTGCAGGCGGTTGGTGAGCAGCTCCTTGTCCAGCTGAACATTGTCTCTCTCCTCAACCACAGAGAGCAGCTCCTTCTTCTGACGGGACGCCTGgcgca

Function

NR:

description
LOW QUALITY PROTEIN: cingulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251552 False 1849 lncRNA 0.49 7 7410342 7412750
TU251551 False 1596 lncRNA 0.50 5 7410872 7412750
TU251553 True 1660 lncRNA 0.39 6 7410872 7412750

Neighbor

gene id symbol gene type direction distance location
LOC110536044 LOC106575458 coding upstream 52934 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 239899 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 296561 7109982 ~ 7113781 (+)
LOC110508380 LOC105029226 coding upstream 311437 7084606 ~ 7098905 (+)
LOC110508390 LOC100194679 coding upstream 326028 7080450 ~ 7084314 (+)
LOC118945274 LOC106575512 coding downstream 24261 7437011 ~ 7447882 (+)
LOC110508431 LOC106575520 coding downstream 47690 7460440 ~ 7500537 (+)
LOC110508507 LOC106575080 coding downstream 205618 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 528552 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 735657 8148407 ~ 8159396 (+)
G220445 LOC106575489 non-coding upstream 31540 7378258 ~ 7381563 (+)
G220437 NA non-coding upstream 43494 7365463 ~ 7366848 (+)
G220435 NA non-coding upstream 45057 7359668 ~ 7365285 (+)
G220432 NA non-coding upstream 60766 7348838 ~ 7349576 (+)
G220466 NA non-coding downstream 1662 7414412 ~ 7417856 (+)
G220475 LOC106575505 non-coding downstream 15335 7428085 ~ 7429111 (+)
G220476 NA non-coding downstream 16894 7429644 ~ 7430128 (+)
G220513 LOC106613263 non-coding downstream 77404 7490154 ~ 7490423 (+)
G220518 NA non-coding downstream 82294 7495044 ~ 7495322 (+)
LOC110508323 LOC106575347 other upstream 423820 6979131 ~ 6988449 (+)
LOC110520781 osgin2 other upstream 465363 6937600 ~ 6947976 (+)
LOC110520790 LOC106606111 other downstream 757957 8170634 ~ 8178058 (+)
G221299 s10i other downstream 986321 8399071 ~ 8489067 (+)
G221514 NA other downstream 1316227 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1348584 8715996 ~ 8766590 (+)

Expression


Co-expression Network