G220475 (LOC106575505)


Basic Information

Item Value
gene id G220475
gene name LOC106575505
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7428085 ~ 7429111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251567
GCGGGTCTGTCCGATTGGCTGACAGCGTCTCCACAGCGACAAACCTCCCCGGCGGAGCCCACTGATTGGCTGGGTGGGGTGTTGCCTTGCTGACGGAGCCTTGGACCCGCCCCAGGCTGCtgtgagtggaggagggaggggaggagtagggattgggggtgagagagggtgaaggggatgAGTAGGGGTTGGGGGCGAGGGAAGAGGAGATGGTGTTTCTAGGGTCCTCTGCTACAGGAGAGCACCCCCTCTGTTGTTCTCTGGTACTGCTGCTGCCGTCAAACCTACTGATGAGTCTGTTGACGGGGGTCTGGGGGTGGGGCTGTGTTGCGTAAGGAAGGCTCTGGGGGTGGGGGTGTGCTGGGTAAGGAAGGCTCTGGGGGTGGGGGTGTGCCATGGTCAGGGGGGGCTGCTCTGTTTGGGAAGGGTGGAGGTCAGGGGCATActgactcccccctcccctccccagtgACCCGTTGAGCCCAGACTGATATGACCCACACATTATATTCCTCCCCTtacccccctccctcctctcggtCTCTCCTGCGGGGCAGACTGCCGTAACCCGGGGGGTAGTGGGTACGGAGCTGCACCCCATACGAATCTCCCTTTGGGCCCCCGTCCTTCATAACCACATAGGGTTGTCCAGCGATGCCCTGGACCCTGACAGCCACCCCGTACTTAGAGGTGGAGGGGGGCTTGGATCTCAGCTGGGTCGAGGGGAGCCCCCCTCCTGAGTCGTTGATGAAGCGGATCTGAACCCCGTAGTCCACGGGGCTCTTACGACCTGACGGAGTACTCAt

Function

NR:

description
cingulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251567 True 806 lncRNA 0.46 3 7428085 7429111

Neighbor

gene id symbol gene type direction distance location
LOC110536044 LOC106575458 coding upstream 70677 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 257642 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 314304 7109982 ~ 7113781 (+)
LOC110508380 LOC105029226 coding upstream 329180 7084606 ~ 7098905 (+)
LOC110508390 LOC100194679 coding upstream 343771 7080450 ~ 7084314 (+)
LOC118945274 LOC106575512 coding downstream 7900 7437011 ~ 7447882 (+)
LOC110508431 LOC106575520 coding downstream 31329 7460440 ~ 7500537 (+)
LOC110508507 LOC106575080 coding downstream 189257 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 512191 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 719296 8148407 ~ 8159396 (+)
G220397 NA non-coding upstream 8691 7406440 ~ 7419394 (+)
G220466 NA non-coding upstream 10229 7414412 ~ 7417856 (+)
G220463 LOC106575505 non-coding upstream 15335 7410342 ~ 7412750 (+)
G220445 LOC106575489 non-coding upstream 49283 7378258 ~ 7381563 (+)
G220437 NA non-coding upstream 61237 7365463 ~ 7366848 (+)
G220476 NA non-coding downstream 533 7429644 ~ 7430128 (+)
G220513 LOC106613263 non-coding downstream 61043 7490154 ~ 7490423 (+)
G220518 NA non-coding downstream 65933 7495044 ~ 7495322 (+)
G220527 NA non-coding downstream 82940 7512051 ~ 7513038 (+)
G220529 NA non-coding downstream 87216 7516327 ~ 7516551 (+)
G220435 NA other upstream 62800 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 441563 6979131 ~ 6988449 (+)
LOC110520781 osgin2 other upstream 483106 6937600 ~ 6947976 (+)
LOC110520790 LOC106606111 other downstream 741596 8170634 ~ 8178058 (+)
G221299 s10i other downstream 969960 8399071 ~ 8489067 (+)
G221514 NA other downstream 1299866 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1332223 8715996 ~ 8766590 (+)

Expression


Co-expression Network