G220530


Basic Information

Item Value
gene id G220530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7518976 ~ 7519671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251637
CCCCTCTACAGTATCTCTAACCCCTTCTCTTTTAACATTAGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGATAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGACGAGGGTAATGATGATGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGAGGTCCTGAGGGTAGGTCGGGTGAGGTCCTGACGAGGGTAATGATGATGGGTCATGTCCTGAGGGTAGGTCGGGTGATGTCCTGATGATGGGTGATGTCCCGATGAGGGTAATGATGATGGGTGATGTCCTGATGAGGGTAACCCTAGAGCCCCAACCCACAGGTAAATTTCCCATCTGACAATGTCACACACCAAAATGCATGCGCattcccacaaacacacacacctgtcccctgGGCCTAGGCCAATTAGGACTGATCGTACATTAGCCTAATTAGTGGGTGAGTGAGAGCAGAACACACCCATGGTCTGATGCCAGGTGTAGGATTCTGTTTCA
>TU251639
CCCCTCTACAGTATCTCTAACCCCTTCTCTTTTAACATTAGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGAGGTCCTGAGGGTAGGTCGGGTGAGGTCCTGACGAGGGTAATGATGATGGGTCATGTCCTGAGGGTAGGTCGGGTGATGTCCTGATGATGGGTGATGTCCCGATGAGGGTAATGATGATGGGTGATGTCCTGATGAGGGTAACCCTAGAGCCCCAACCCACAGGTAAATTTCCCATCTGACAATGTCACACACCAAAATGCATGCGCattcccacaaacacacacacctgtcccctgGGCCTAGGCCAATTAGGACTGATCGTACATTAGCCTAATTAGTGGGTGAGTGAGAGCAGAACACACCCATGGTCTGATGCCAGGTGTAGGATTCTGTTTCA
>TU251640
CCCCTCTACAGTATCTCTAACCCCTTCTCTTTTAACATTAGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGATAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGACGAGGGTAATGATGATGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGATGTCCTGAGGGTAGGTCGGGTGAGGTCCTGAGGGTAGGTCGGGTGAGGTCCTGACGAGGGTAATGATGATGGGTCATGTCCTGAGGGTAGGTCGGGTGATGTCCTGATGATGGGTGATGTCCCGATGAGGGTAATGATGATGGGTGATGTCCTGATGAGGGTAACCCTAGAGCCCCAACCCACAGGTAAATTTCCCATCTGACAATGTCACACACCAAAATGCATGCGCattcccacaaacacacacacctgtcccctgGGCCTAGGCCAATTAGGACTGATCGTACATTAGCCTAATTAGTGGGTGAGTGAGAGCAGAACACACCCATGGTCTGATGCCAGGTGTAGGATTCTGTTTCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU251637 False 643 lncRNA 0.54 2 7518976 7519671
TU251639 False 429 lncRNA 0.52 2 7518976 7519671
TU251640 True 574 lncRNA 0.53 2 7518976 7519671

Neighbor

gene id symbol gene type direction distance location
LOC110508431 LOC106575520 coding upstream 18439 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 71094 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 161568 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 348533 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 405195 7109982 ~ 7113781 (+)
LOC110508507 LOC106575080 coding downstream 98697 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 421631 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 628736 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 650963 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 725557 8245228 ~ 8249653 (+)
G220529 NA non-coding upstream 2425 7516327 ~ 7516551 (+)
G220527 NA non-coding upstream 5938 7512051 ~ 7513038 (+)
G220518 NA non-coding upstream 23654 7495044 ~ 7495322 (+)
G220513 LOC106613263 non-coding upstream 28553 7490154 ~ 7490423 (+)
G220476 NA non-coding upstream 88848 7429644 ~ 7430128 (+)
G220542 NA non-coding downstream 11877 7531548 ~ 7532551 (+)
G220545 LOC106573876 non-coding downstream 16989 7536660 ~ 7537143 (+)
G220555 NA non-coding downstream 25532 7545203 ~ 7545412 (+)
G220548 NA non-coding downstream 32489 7552160 ~ 7552848 (+)
G220559 NA non-coding downstream 37611 7557282 ~ 7557818 (+)
G220445 LOC106575489 other upstream 137413 7378258 ~ 7381563 (+)
G220435 NA other upstream 153691 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 532454 6979131 ~ 6988449 (+)
G221299 s10i other downstream 879400 8399071 ~ 8489067 (+)
G221514 NA other downstream 1209306 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1241663 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1254376 8772336 ~ 8800464 (+)

Expression


Co-expression Network