G220545 (LOC106573876)


Basic Information

Item Value
gene id G220545
gene name LOC106573876
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7536660 ~ 7537143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251661
cttgaaatgatgtggaaagaACATTGATTCAAttagtttttgcccagtgggaagtgtGTTAGTACTGGAGGATGGAGCAATAGCCTGCACACCTTTACTTTCGCCAGGACCATGGTTGAAGATTACTGCTAGACATCACATTGAGATACAACACAGAGTAACTCCTCATCCTGGCCCACCTTCAGCTCTCGGACCATGGGGAACATGTTGTTTTCACAGTCAGAGGACTGGATCATCTTCCCTCTGAGTTCCAGGAGCATGGGGAACTCAGGAGCGGGAACATGGCCTACGGTGAGGTAGGTTCCTGGGCCTGTGTCGATGAGGAGGTGCTGGAGCTTGGTGGGGAAACCCAGGAACAGCATGTTGAGGTAGAGCTGGTAGATAATGTCTATCTCTCCCAGGCTGAGGTCTTGGAGTCGATGCTGTCTACGGAACACCCCATGAGCGATGCCCCCTGAGATCTTGTTCCCTTCCAGGAGGAGAA

Function

NR:

description
PREDICTED: toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251661 True 484 lncRNA 0.51 1 7536660 7537143

Neighbor

gene id symbol gene type direction distance location
LOC110508431 LOC106575520 coding upstream 36123 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 88778 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 179252 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 366217 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 422879 7109982 ~ 7113781 (+)
LOC110508507 LOC106575080 coding downstream 81225 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 404159 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 611264 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 633491 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 708085 8245228 ~ 8249653 (+)
G220542 NA non-coding upstream 4109 7531548 ~ 7532551 (+)
G220510 NA non-coding upstream 12132 7517202 ~ 7524528 (+)
G220530 NA non-coding upstream 16989 7518976 ~ 7519671 (+)
G220529 NA non-coding upstream 20109 7516327 ~ 7516551 (+)
G220527 NA non-coding upstream 23622 7512051 ~ 7513038 (+)
G220555 NA non-coding downstream 8060 7545203 ~ 7545412 (+)
G220548 NA non-coding downstream 15017 7552160 ~ 7552848 (+)
G220559 NA non-coding downstream 20139 7557282 ~ 7557818 (+)
G220565 NA non-coding downstream 36746 7573889 ~ 7574231 (+)
G220549 NA non-coding downstream 39927 7577070 ~ 7580334 (+)
G220445 LOC106575489 other upstream 155097 7378258 ~ 7381563 (+)
G220435 NA other upstream 171375 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 550138 6979131 ~ 6988449 (+)
G221299 s10i other downstream 861928 8399071 ~ 8489067 (+)
G221514 NA other downstream 1191834 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1224191 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1236904 8772336 ~ 8800464 (+)

Expression


Co-expression Network