G220549


Basic Information

Item Value
gene id G220549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7577070 ~ 7580334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251665
CCAAAGTGTAAATCCAGAAACTGCATTTTAAAGCCAAACTCACCAAGAAAGATTCATGACATATGCATTTATATGCAATCTGTGATTTCAGGTACAGGTGTAAACAGATGTATTTCCCCCCCAAAAGAACAAGAGCATTACAACAGAACTGTAAAAAGTACAAAATTAAATCAATATTTGTGAAGGCTAATTGAAAATAACCCTTTGGCTTTCAAAACTCAAATTAAAAAGTACATCAAAACAACAATATAGAAAGTGTAAAAACAATGATTTCCATGCAACAAAGGCAACTGTGATGAACAATGACAACGCTAGAATGTTTCACAAATTATGTAGAGGATAGATGATTCCTTTTACACACACACCTTGGGGCTTGCATACTTGTTTTCTTGTTGCCTATCCAGGACCTATAGTcacttaaacagtctgtgtctaaCACAGCTGTCCTTCCTGTGTGTTTGTGACAGAATGAAGCAAAGGCCTCACACACAGAGCACAAGTGCCACCATGTAAGAACTACACAACCCCCTACACTCCCAACCATAAACTCTGATCATCCACACATCCtctctcacaacacacacacaagcacgatGAGAAAGATGAATAAAACAATTACCTGTCCGGGTTCAGAGAGCCCTTTCTCATGACTAGAGTTGCAAAATTCAgataactttccccaaattccccggttttcCAGAAATATTTTGTACAGCAGGTGGCAGATCCCAGGTTACTCTTCACTTCCACATTTACAGTTTGGTTTCAGCCTCCCTCAAAAACCTGGACATGGTTCATTGGCTAGAATCAAAATGAATTGGATTCAGAGAGAAAAGTTTTCCGTGGGTATTACATGTGAAATACAGTATCTGGTTCTGTCCCACCCATGTTATTAATAACATCTAAACAATAAAGACTTTCATTTCAATGAGAGCTGCGACATCAAGCAACCGTGACAACAGGAAGTAAGAATGAATGTGCAATAGAGGAGCGGATTGGCATCACTGGACCTGGGTGGTGAGAGTCAGTGTCCTTTTTGCAGAGTCTTTGATGGACTGAGAGACCATGTGACAGGATCCAACAGTCCACTACATTTGGATTAAGTACATCAACTGACTGTACAATAAGCACAGTACATTAGGTGACAGGCTGCACTGGAGTGAGGTGACTGCATCGAAGAAACAAGGCACGAGTAAAAGATACAAAACATATcatgaagagaaggagggagaggatgattCCTCCACGTTCTCTCCCTCTACTATCTTCTAATTCCAAGGAAAACAACACGTCAAAGTCCAACATCTGACCAACGTTCGCGAAGCTCCCAGATTTTGTTGTGAACAGTGCTGATAACACAGTTTTCCCTGCAGTGAACTGAGAAGAATCATCACACACTAATGCttacgctaatgctaacgctaaaagCTAATCTCCTGACCAAGTGTTGCAGCACATTTGGAGAGGAGATAAAATCTATGCTTTGAATGCTCTGGACCGAACGCTTTCGGCATTAAACACACTTCATCCAGTATGCCCCCcaacccctccaccccccacccaTCCAGACAGAGACATGGCCATAGATTGTCAAGGCAAGCAGATATTAACAACAAATCCATTGAAAAGCAAGAAAATATTGGCATTAATCCGAACTACGATTCCAACACAGCACCGATTAAATTGTGACAGTCGCATTTGGGTTGACTGTGACATCGTCCTAGAATTGGTTTTGAACTCTTTCAGATGACATCGTGTCTAGGTCTGATGACATCTCTAGATGTGGAATCTCCCAATGAAAGTACATGACAGACAGACTAGCACACTGTATGTTGGTGTAGGAGTCATCTCCATGGTTTCTGCCGCCCCAGTCCAACCAAGTCCACTTTCTTTGTCATGATCAGGACAGAAAGGTAAGACCAGtcccatgcagacagacagggagaccagtcccatgcagacagacagggagaccagtcccatgcagacagacaggcggatGTCGGACATCCTTTTATCAAACTCCACCTTCAGAGGCCGGAAAGAAACCTTGTCCATAtttggacagacagagacaatggTTGTTGGTATAGCAACCCCCTTTTTGCATACAGAGACCGTGATATCACCAGGTATCACTCAGGGTCAATGGTCAAAGATGAAAGGTATTTTAATGGAAGTGGCTTGATGGTAAGCGAGGGCCCTGATTGGTGTGGACACAAAAATGTCAATGCATATTAACAGGAGGCCTGATCTCAGTCATGATTGGTTATTCATGTGTTCCACTGATATTTGATTGGCTGTTCCTGTGTTCCACTGATATTTGATTGGCTGTTCCTGTGTTCCACTGATATTTGATTGGCTCTCTGATGAGTCCAATCATCAGACAAGTCTTTGGAGTGCTTCTGTGACGGTGAGAGAAACTGTTTCCTCTGCCATGTCTGGATCAAGacctctccccccatccctccattcctttcTCTACGTTTCACTCCTCCCCTCCAAGGTGCATAGTCCTCTTTTACTATGATAGAATCATTCAGAAATGATACAATGGCATGATTTAATTAATAATGCTCAGTTTTTTTACTAAATTGTATTAATTTCTGTCCCAATGAGAAGGAAAATAAAATGTTCCTAGGTGTTACTCCCACGTTctttggagggatggagggagtggacCTCGATGACGGAAGGATGAACAGAAGTAGGGATCACTGAGGTAACAGTGAGTCGTccaggaggagagaagggtgtgAGGAAAAGCAGAGAGCAAATGATTTTGGCAGAAAGAGTGATAGAGGTGTTTTTTTGGCTTTCCTTAATGTTGTCAGCACTGCTTATGTGTGTAGTGtttctgagagtgtgtgtgtgttgcattgctgtgtgtgtgtgtgttcaggcccCGTGCTCCACTGGTTGTTGCAGACACACCTCACTGCCTGCTGATACGATGGGCAGTCTGTTGTCCATGTGGTAACTGATCAGGTGGCTCACACTCTCAAAGTGGTGGTCTTTG

Function

NR:

description
PREDICTED: SHC-transforming protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251665 True 3019 lncRNA 0.49 4 7577070 7580334

Neighbor

gene id symbol gene type direction distance location
LOC110508431 LOC106575520 coding upstream 76533 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 129188 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 219662 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 406627 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 463289 7109982 ~ 7113781 (+)
LOC110508507 LOC106575080 coding downstream 38034 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 360968 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 568073 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 590300 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 664894 8245228 ~ 8249653 (+)
G220565 NA non-coding upstream 2839 7573889 ~ 7574231 (+)
G220559 NA non-coding upstream 19252 7557282 ~ 7557818 (+)
G220548 NA non-coding upstream 24222 7552160 ~ 7552848 (+)
G220555 NA non-coding upstream 31658 7545203 ~ 7545412 (+)
G220545 LOC106573876 non-coding upstream 39927 7536660 ~ 7537143 (+)
G220552 NA non-coding downstream 20067 7600401 ~ 7605519 (+)
G220575 NA non-coding downstream 33329 7613663 ~ 7614792 (+)
G220576 NA non-coding downstream 36583 7616917 ~ 7617057 (+)
G220578 NA non-coding downstream 48930 7629264 ~ 7630255 (+)
G220582 NA non-coding downstream 53584 7633918 ~ 7634120 (+)
G220445 LOC106575489 other upstream 195507 7378258 ~ 7381563 (+)
G220435 NA other upstream 211785 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 590548 6979131 ~ 6988449 (+)
G221299 s10i other downstream 818737 8399071 ~ 8489067 (+)
G221514 NA other downstream 1148643 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1181000 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1193713 8772336 ~ 8800464 (+)

Expression


Co-expression Network