G220552


Basic Information

Item Value
gene id G220552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7600401 ~ 7605519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251669
GCGGGGGTGGAAGGGGGGAGGGACAAAGGGTTGGAGTTGGTATCGTCATTCGAACTGAGAGATTCACTCCGGAAGTGAGTGTACTTAGTTTTAGGGACCAGCTCCATCATGGATCTGAGATGTTTGATGTTATttcagtgtttctctaacaagtcCACACACACTGGTGTGATTCAGTCTAAACAACAACGGTGgttcattctctccttctctgtattATCAGTCGCTCGCTCAAAAACTCGCTcgtctttctttccctctcagtGACCGTTGTCTGTCCGTCCGCCCTGTTTTATATCCTCCCGTCATTGTCAGGCAGTGCAGCAGACACTGCGCAAGAAACACCATCTACAAGACAGAGGAGAGCAGCAAGAGGAGCGATTGAAGATCAGAGGGGATCACTCTAAGAGTCTAACCCAGCACACTGATGGAGTGATACTCAGTTGTTTGGTGTCTTCGCTGTCAGTCTTACAACATGTTATCACTTTCAATCCACAGAAATTAATGCCACTTTCCAATAGACAGAATCAAAAAGGATTTTTGTGATCAAGTATGTAGCACCTGTTCTGAAAAATGCTGTTTGAGCACATCAGCATGTCAACTAATGTAGCATGGCACTTAAGTCCAGTTGTTCATCTTTGAGCACCATGGAGATTCCACATACAACCTCAGAATGTGATTGTCTATTGACACAGAAACTCAGGTGGTATGAGTTACTCAATCAAGGGGCCTACCCTCATGTGTCTGTTAGCATGTGTTGGAGTAGAAACCTACTCTACTGCCTGTAAATGGCACAGAGTGTGTgagtctgtggtgtgtgtgtgtgcgcgtttcaGCGTGTCTGTCAGGACAGTAGCTCACTAGCCTCTCTTGCCTGACACGGGCCCATAAAATCCCTATCAGCTGCCAACGAGTAGATcagaagggacacacacacacacacacacacgggttgaTACAACAGAGTAAGATTATCTGCAGAGTTTAATATAGCAAAGTTCTGTTAAGACCTGCTGATCTATGGCCAGACACCAATTCTGGCAGGGaaaatctctctatccctcctgctttttattcctctctctctctctttatccctctttctctcctgtgaGCAGCTTTGTTTTTCAGGTTCCAAGGCTGCTGGAGAATGCTCCTAAGTAATTTAACTCTTCCTCCTCTGTactctttcactccctcttccTTACACactccctctcccttttcctcactccctctctctcttcctccagatGGTCTCGTGTCCTCTCTGGATGGCCTTGgctttctccccctcttcctctctcttcctccagatCACCTCCTGTGcagtctctctcccgctctctgcgcttctctctcccctcagcttgtcctctcctatcctctcctggaatccctctctcctcctccacactgtTTTCTGTGCCTCCCTCAGTAGCCGCTGCActtcctccttctctcgctccaCCACTTCCTGCCTTCTCTTCCAAAtgatctctcgctccccctccccccctccctcgtCTCCTTTCCCGTTCTCCAGACTGTCCTCTTAAACAGTCCCTCTACTTCAAagattgtctgtctctctccacactcACTCTGTAACTACAGCCAGAGTCTATACAATGCACATAACCTAGTAACAGACACCACTAGATAAGAAACGACTGATAGATAAGAAAGCACCAGATGCTGGGCTTGTCCCTGACTGAAGTTTCTGATATGGCTAAAACCGTAGGTAGAGCTGTTCTAGAACATTGCTGCCCTGGTTAGAGTGGATACGTTCTGGAGCACCATAGCATCAGAAGTGCTAGAGTTGGAGAAGTTGCCTCTTTCTGGTTACagaaacagtgacacacacagtGGTGATGTAACAAGAGAGAATGTAGGTCATTGGCTGATGACACCATCGGTGGGATTGTTTTGATGATAATGAGACCTGAATGGTACTGGAGGCTTGTTAGAGAACTCCATCACCCAGTCATTACACTTAATTaaacctccctcccctctctctctctcctctcttccactcgtTTAAATCACAAAGTCATTGCCAGATCTCATATcctctccatctatcctctcctcagcttgtcctcttcctctcttccccgtCTCAGTTGAATGTGAAACAGCAGAATGGCAGGGCTGAACAGCGGCACTCCTTcattgtcttcctctcctcctcttgcttCGCTCTCTCATTCCCCTTTGCTTTCCTTCCagctctgtcttgtctgtctgggtgatgccgcctctctctctctcttgctcatgcGCTGCTGCTGTCTCATCCGCtcacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251669 True 2312 lncRNA 0.40 2 7600401 7605519

Neighbor

gene id symbol gene type direction distance location
LOC110508431 LOC106575520 coding upstream 99864 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 152519 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 242993 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 429958 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 486620 7109982 ~ 7113781 (+)
LOC110508507 LOC106575080 coding downstream 12849 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 335783 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 542888 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 565115 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 639709 8245228 ~ 8249653 (+)
G220549 NA non-coding upstream 20067 7577070 ~ 7580334 (+)
G220565 NA non-coding upstream 26170 7573889 ~ 7574231 (+)
G220559 NA non-coding upstream 42583 7557282 ~ 7557818 (+)
G220548 NA non-coding upstream 47553 7552160 ~ 7552848 (+)
G220555 NA non-coding upstream 54989 7545203 ~ 7545412 (+)
G220575 NA non-coding downstream 8144 7613663 ~ 7614792 (+)
G220576 NA non-coding downstream 11398 7616917 ~ 7617057 (+)
G220578 NA non-coding downstream 23745 7629264 ~ 7630255 (+)
G220582 NA non-coding downstream 28399 7633918 ~ 7634120 (+)
G220581 NA non-coding downstream 29968 7635487 ~ 7636196 (+)
G220445 LOC106575489 other upstream 218838 7378258 ~ 7381563 (+)
G220435 NA other upstream 235116 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 613879 6979131 ~ 6988449 (+)
G221299 s10i other downstream 793552 8399071 ~ 8489067 (+)
G221514 NA other downstream 1123458 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1155815 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1168528 8772336 ~ 8800464 (+)

Expression


Co-expression Network