G220581



Basic Information


Item Value
gene id G220581
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7635487 ~ 7636196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU251702
GAGCTACAAGCATAACCACGCTGAGTTCATCTACACCtggaaacatttgtaaaaaagttCAGCCATGTAAAAATGTGGAGATTTTTCAGAATGTTTCAAATAATCTAAATGGATGCCAACACGTGTCTGGACCtctaaatatcaacatttaactGAAACACCTAAAGCAGAGTGTTTACTGCGCTAAAATAAAAACCTCCATTCAAACAAACACCAGCTTTAAGCCTCTCCTCATTGATGGAGGGCCTCACCATGTTAAGTGTTCAGTGACAGTCAAAATAACTGCACACCTGGTGTAAGCAATGTTATGATATCTGTACATTACAATTCTACCTGTGATTACAAAAGTACAATGATTcatgttttgctttatcttgagaTTAAGAATCAGTGGTAGAGACGTAAAGTGCATGAAGAGATCAACTGTACAAAAGTCAAATGTCTGTTAGTTTCCCAATCCTTCTTCCATAGTTTAAACAAACTGCAAATAACAAAAAGCTGAACTCCGACTAGCAGAAACATCTTTGTATTAGCAACTATTAATTAGGAGCTTATATGGTGTTAAAGTTAAGGGACATCACCCTGGCCGGGGTGATCCTCAGTAGGGGATAAAAAGGGAAAACACCATCTTTTGAACTGAGTGTCTTGCTTGCAAATTGCTGTAAGTTTAAACTCCGGGTCGCAATCCTCATTAAACAAACTAACCTCTG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU251702 True 710 lncRNA 0.38 1 7635487 7636196

Neighbor


gene id symbol gene type direction distance location
LOC110508507 LOC106575080 coding upstream 7520 7618368 ~ 7627967 (+)
LOC110508431 LOC106575520 coding upstream 134950 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 187605 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 278079 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 465044 7161950 ~ 7170443 (+)
LOC110513974 efna3 coding downstream 305106 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 512211 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 534438 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 609032 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 613557 8249753 ~ 8254163 (+)
G220582 NA non-coding upstream 1367 7633918 ~ 7634120 (+)
G220578 NA non-coding upstream 5232 7629264 ~ 7630255 (+)
G220576 NA non-coding upstream 18430 7616917 ~ 7617057 (+)
G220575 NA non-coding upstream 20695 7613663 ~ 7614792 (+)
G220552 NA non-coding upstream 29968 7600401 ~ 7605519 (+)
G220587 NA non-coding downstream 5445 7641641 ~ 7642008 (+)
G220588 NA non-coding downstream 5932 7642128 ~ 7642584 (+)
G220589 NA non-coding downstream 8258 7644454 ~ 7644661 (+)
G220590 NA non-coding downstream 9181 7645377 ~ 7645643 (+)
G220591 NA non-coding downstream 9827 7646023 ~ 7646310 (+)
G220445 LOC106575489 other upstream 253924 7378258 ~ 7381563 (+)
G220435 NA other upstream 270202 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 648965 6979131 ~ 6988449 (+)
G221299 s10i other downstream 762875 8399071 ~ 8489067 (+)
G221514 NA other downstream 1092781 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1125138 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1137851 8772336 ~ 8800464 (+)

Expression



Co-expression Network