G220588


Basic Information

Item Value
gene id G220588
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7642128 ~ 7642584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251709
GTACTAGACCAGCTGGAGGATATAAACTCTTCTGTAGCGTTTCTACAGGAGACACACGTTGGACCTGAGGATGGCAATCTTTTAGAGGATGTTCCGGGTTGGAAATCATTCTTCACTGTATTTAATTCAAAAAGCAAAGGAGTGGCCATACTGACAGAAGATCTAGTCACATCAAatattattagtcacatgcaccgaatatacaagtgtagaccttacagtgaactcCTTActtactaaccctaaccaacaatgcagtaaaaaaaagaaaaagaataagaaataaaagtaacaagtaattaaacagcaacagtaaaataacaatagcgagactatatatagggggtaccggtacagagtcaatgtgctgaggcaccggttagtcgaggtagtatgtacatgtagatagttattaaagtgactatgcatagatgataacaacagagagtagcagtgg

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265768

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251709 True 457 lncRNA 0.38 1 7642128 7642584

Neighbor

gene id symbol gene type direction distance location
LOC110508507 LOC106575080 coding upstream 14161 7618368 ~ 7627967 (+)
LOC110508431 LOC106575520 coding upstream 141591 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 194246 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 284720 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 471685 7161950 ~ 7170443 (+)
LOC110513974 efna3 coding downstream 298718 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 505823 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 528050 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 602644 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 607169 8249753 ~ 8254163 (+)
G220587 NA non-coding upstream 120 7641641 ~ 7642008 (+)
G220581 NA non-coding upstream 5932 7635487 ~ 7636196 (+)
G220582 NA non-coding upstream 8008 7633918 ~ 7634120 (+)
G220578 NA non-coding upstream 11873 7629264 ~ 7630255 (+)
G220576 NA non-coding upstream 25071 7616917 ~ 7617057 (+)
G220589 NA non-coding downstream 1870 7644454 ~ 7644661 (+)
G220590 NA non-coding downstream 2793 7645377 ~ 7645643 (+)
G220591 NA non-coding downstream 3439 7646023 ~ 7646310 (+)
G220592 NA non-coding downstream 4525 7647109 ~ 7647331 (+)
G220593 NA non-coding downstream 4806 7647390 ~ 7647602 (+)
G220445 LOC106575489 other upstream 260565 7378258 ~ 7381563 (+)
G220435 NA other upstream 276843 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 655606 6979131 ~ 6988449 (+)
G221299 s10i other downstream 756487 8399071 ~ 8489067 (+)
G221514 NA other downstream 1086393 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1118750 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1131463 8772336 ~ 8800464 (+)

Expression


Co-expression Network