G220939



Basic Information


Item Value
gene id G220939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7644746 ~ 7645280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU252127
cttcaatattttgtctagcccattcaccctttgaatggcacacgtacacaatccatgtctcaattgtctcaaggcttaaaatccttctttaacctgtctcctccccttgatCTAcgctgatttgaagtggatttaacaagtgacatcaataagggatcacagctttcacctttATCTCATTGCGGATGTTGCCtataatctatggcttctggttggggtaagtacgtacggtcactgtggggacgacgtcattgatgcacttattgattaagccaataactgatgtggtgtactcctcaatgccatcagaagaatcccggaacatattctggtctgtgctagcaaaacagtcctgtagcttagcatctgcttcatctgaccacttttttattgaccgagtcactggtgcttcctgctttaattttagcttgtaagcaggaatcaggaggatagaattatggtcagagttgctaaatggagggcgagagagagctttgaatgtgtctctgtgtgtggagtaaaggtggtccagagt

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU252127 True 535 lncRNA 0.43 1 7644746 7645280

Neighbor


gene id symbol gene type direction distance location
LOC110520788 LOC106593005 coding downstream 27553 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 69132 7573853 ~ 7575614 (-)
LOC110508494 LOC106575071 coding downstream 71227 7554786 ~ 7573519 (-)
LOC110508481 LOC106573839 coding downstream 92719 7531548 ~ 7552027 (-)
LOC110508472 LOC106573847 coding downstream 114563 7528026 ~ 7530317 (-)
si:dkey-246i14.3 LOC106570832 coding upstream 99078 7744358 ~ 7840475 (-)
LOC110520794 LOC105024462 coding upstream 569312 8214332 ~ 8243743 (-)
LOC110520844 LOC106605887 coding upstream 821656 8466936 ~ 8495390 (-)
LOC110520892 LOC106605923 coding upstream 1053755 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 1056183 8701463 ~ 8701598 (-)
G220938 NA non-coding downstream 1086 7643412 ~ 7643660 (-)
G220934 NA non-coding downstream 8624 7635449 ~ 7636122 (-)
G220933 NA non-coding downstream 9939 7634316 ~ 7634807 (-)
G220930 NA non-coding downstream 13374 7631052 ~ 7631372 (-)
G220929 NA non-coding downstream 14669 7629355 ~ 7630077 (-)
G220940 NA non-coding upstream 749 7646029 ~ 7646314 (-)
G220941 NA non-coding upstream 1702 7646982 ~ 7647321 (-)
G220942 NA non-coding upstream 3466 7648746 ~ 7649072 (-)
G220948 NA non-coding upstream 10777 7656057 ~ 7656318 (-)
G220956 NA non-coding upstream 29425 7674705 ~ 7741276 (-)
LOC110508454 s10ag other downstream 120254 7517195 ~ 7524544 (-)
LOC110520792 LOC106575505 other downstream 208575 7408252 ~ 7436195 (-)
G220751 NA other downstream 443325 7176392 ~ 7201421 (-)
G221788 LOC106574877 other upstream 704039 8345683 ~ 8350289 (-)
G221806 NA other upstream 749081 8394361 ~ 8410809 (-)
G221807 adar other upstream 857904 8503184 ~ 8523208 (-)
G221986 NA other upstream 1117839 8763119 ~ 8763884 (-)
LOC110520835 ash1l other upstream 1159417 8804651 ~ 8839679 (-)

Expression



Co-expression Network