XLOC_021823 (si:ch211-210c8.6)


Basic Information

Item Value
gene id XLOC_021823
gene name si:ch211-210c8.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33752275 ~ 33757742 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043273
CTCATATATTCTAGCAGAAGTTTGTATGATTGAACTCAAGTTTGTGACACTGCTGCTTCAGGACCTTCCGGAAATGATCATGGGAAGCACGTTGGCGAAGTGTGCAGCCACAGACCTGGCCATTCAGTGGGTCGGGTGGGCACTTGCCTGCTCTTTCAAAACGGAGAAGTTTTACGACTTGGCAGGATCTGGTACCTTCATATTGCTGGCTCACCTCAGTCGTGTATGGGGCGGAAGTGGACACCTTAGACAGAATGTACAAACTGGACTTGTCACTGCATGGGGATTGAGGCTCGGGACATTTCTCTTTCTTAGAATCCTAAAGGAAGGACAAGACCGGAGGTTTAACAATGTCAGAGACAGCCCTGGGACATTCTTTGTTTACTGGACCATGCAAGCATTGTGGGTCTTTGTTACCCTTTTGCCCACCCTAATTCTGAACAGTGAGAGAAGAGATGAGCCTCTAGGCCCGCGGGACTACATTGGCTGGGGAATATGGGGGCTGGGTTTTGCTACAGAGGCCATTGCAGACCAACAGAAGTGGAATTTTAAAAATGATCCAGATAATGTGGGGAAGTTCATTCATCATGGGCTGTGGGCGTACAGCAGGCACCCAAATTACCTGGGGGAGATCCTGCAGTGGTCCGGCCTGTTCCTGTCTGCTTCCTCCATCATGCAAGGACCTCAATACCTCAGTGCACTTTCTCCACTTTTCGTTTGGTTCTTACTGAGACACGTTAGTGGGATCCCCATTCTTGAGAAGCAGGCTATGAAGAAGTGGGGGTCGGACCCCGCTTTCCAGAACTACGTCAAAAACACTCCCCTTCTATGGCCCTTTCCAAAAGTTAAAGGAGAATAAAGCATGTTTACAGTAATTGCACCTGACAAATGAACATTGAGAGCTGCTGATTGAATTCCTATATGGAAAATTTGTATTAGGTGCCGTTTACACTAGAGAGTTTTCATTTTAACGTTTGTTTTGATAGTTTTGTCTGTTGTCCACACTACACTGGCATATTTGACCTACAAAAACTGAGCGTTTTGCAAATGCTAAAGACCCTGTACTAGTTTGGGTTGGGTTGATTTTGATAAATTCAATAAAAGATGGattgaaacacattttttttgaaaatagaaGCACAGCCATCAGACAACCACTTTCTTTTTGCTCTACCAGACAATAGATCCTTTT

Function

symbol description
si:ch211-210c8.6 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in membrane.

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3630 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in membrane.

Ensembl:

ensembl_id ENSDARG00000017811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043273 True 1192 mRNA 0.45 5 33752275 33757742

Neighbor

gene id symbol gene type direction distance location
XLOC_021822 dazap2 coding upstream 22723 33718602 ~ 33729552 (+)
XLOC_021821 CT027694.1 coding upstream 214106 33538051 ~ 33538169 (+)
XLOC_021820 NA coding upstream 293010 33455563 ~ 33459265 (+)
XLOC_021819 rapgef3 coding upstream 308220 33381154 ~ 33444055 (+)
XLOC_021818 si:ch211-226m16.3 coding upstream 442653 33294633 ~ 33309622 (+)
XLOC_021824 CR354542.1 coding downstream 2005 33759747 ~ 33760665 (+)
XLOC_021825 CR381531.2 coding downstream 19777 33777519 ~ 33901337 (+)
XLOC_021826 CR381531.1 coding downstream 70923 33828665 ~ 33830190 (+)
XLOC_021827 cs coding downstream 150157 33907899 ~ 33928316 (+)
XLOC_021828 wu:fc63a07 coding downstream 176486 33934228 ~ 33953106 (+)
XLOC_021817 dre-mir-205 non-coding upstream 461914 33290273 ~ 33290361 (+)
XLOC_021816 AL928610.1 non-coding upstream 633151 33119010 ~ 33119124 (+)
XLOC_021815 NA non-coding upstream 1172841 32577050 ~ 32579434 (+)
XLOC_021831 NA non-coding downstream 220969 33978711 ~ 33983432 (+)
XLOC_021833 AL954678.1 non-coding downstream 245015 34002757 ~ 34002873 (+)
XLOC_021837 NA non-coding downstream 1007201 34764943 ~ 34768352 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_03603684_03607612 NA coding CI01000001 null 3603346 ~ 3607612 (-)