G220645


Basic Information

Item Value
gene id G220645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7748346 ~ 7757714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU251771
atgttaacacgtttcccatgccaataaagcccttgaattgaattgaattgaattgacagtcgTAGAGACAGTCATAGAGACAGCTGTAGAGACAGTCGTAGAGACAGCTGTAGAGACAATCGTAAAGATAGAGGTAGAAAGAGACAGTCGTAGAGACAATcgtagagatagaggtagagatagagacagtCGTAGAGACAGCTGTAGAGACATtcatagagatagaggtagagacagatgTAGAGAGTCGTAGAGATAAAGATAGTcgtagagagagacagtcagagatagaggtagagatagagacagtGGTAGAGACAGCTGTAGAGACAGTCGTAGAgatagagacagtcagagacagtcgTAGAGACAGTCGTAGAGAAAGTCGTAGAGAAAGTCGTAGAGACAGCTGTAGAGACAAtcatagagatagaggtagagatagagacagtCGTAGAGAAAGATGTAGAGACAGTCGTAGAGATACAGATAGCCGTAGAGACAGTcgtagagagagacagtcatAGAGATCGAGGTAGAGATAGttgtagagaaagagacagttgtAGAGACAGTCGTAGAGATAGCCATAGAGACAGTCGTAGAGACAGATGTAGAGACAATCGTAGAGGTAGAGACAGTCGTAGAGACAGTtgtagagacagaggtagagatagagacagtCTTAGAGACAATcgtagagatagaggtagagatagagacagtCGTAGAGACAGCTTTAGAGACAGCcgtagagatagagatagccgTAGAGaccGTCGTAGAGAAAGAGACCGTCGTAGAGAAAGAGACCGATACAGTCGTAGAGACAGTCgtagagaaagaaacagagacagtCGTAGAGACAGtcgtagagaaagagacagtcgTAGAGACCGTCGTAGAGACCGTcgtagagatagaggtagagatagagacagcTGTAGAGACAGtcatagagatagaggtagagatagagacagtTGTAGAGACAGCTGTAGAGACAGCTGTAGAGACAAtcatagagatagaggtagaaaGAGACAGTCGTAGAGACAGTCGTAGAGACagctgtagagagagagttgaaagaATCCAGAGGGAGACTGTGGCTAAAGGACGGGAACGGCCATTGCTGGGTCCTCACACACACTGTATGTGCCACACTGCCATGCTGGCTGTCAGATAAAAGGGAATCTCTACAGgaaggaaccagagagagagtgaggcgtTGCTGCAGGGAGCACAACAACAGCTGCACTAAACAACCACTAATGGACAtgcagacagaggcagagagagagagagagagaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU251771 True 1316 lncRNA 0.46 3 7748346 7757714

Neighbor

gene id symbol gene type direction distance location
LOC110508507 LOC106575080 coding upstream 120379 7618368 ~ 7627967 (+)
LOC110508431 LOC106575520 coding upstream 247809 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 300464 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 390938 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 577903 7161950 ~ 7170443 (+)
LOC110513974 efna3 coding downstream 183588 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 390693 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 412920 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 487514 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 492039 8249753 ~ 8254163 (+)
G220600 NA non-coding upstream 1521 7663177 ~ 7746825 (+)
G220595 NA non-coding upstream 98353 7649225 ~ 7649993 (+)
G220593 NA non-coding upstream 100744 7647390 ~ 7647602 (+)
G220592 NA non-coding upstream 101015 7647109 ~ 7647331 (+)
G220591 NA non-coding upstream 102036 7646023 ~ 7646310 (+)
G220668 NA non-coding downstream 26798 7784512 ~ 7785474 (+)
G220679 NA non-coding downstream 49007 7806721 ~ 7807143 (+)
G220680 NA non-coding downstream 49594 7807308 ~ 7807663 (+)
G221077 NA non-coding downstream 92924 7850638 ~ 7850852 (+)
G221141 NA non-coding downstream 173283 7930997 ~ 7934358 (+)
G220445 LOC106575489 other upstream 366783 7378258 ~ 7381563 (+)
G220435 NA other upstream 383061 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 761824 6979131 ~ 6988449 (+)
G221299 s10i other downstream 641357 8399071 ~ 8489067 (+)
G221514 NA other downstream 971263 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1003620 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1016333 8772336 ~ 8800464 (+)

Expression


Co-expression Network