G221262


Basic Information

Item Value
gene id G221262
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8163294 ~ 8164016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU252494
ATATGTACCaacccatcttaatattttctaaTAACAtattgcccatcttaatattttctttaaattggccagtctgagatatggctttttctttgcaactctgccaaaaaggccagcatcccagagtcgcctcttcactgttgacgttgagactggtgttttgtgggtactatttaatgaagctgccagttgaggacttgtgaggcgtctgtttctcaaactagacactctaatgtacttgtcctctttctcagttgtgcaccggggcctcccactcctcgttctattctggttagattcagtttgcgctattctgtgaagggagtagtacacagcgttgtacgagatcttcaatttattggcaatttcttgcatggaatagccttcatttctcggaacaagaatagactgacaagtttcagaagaaagttctttgtttctggcatTTTTATCCTGTaaccgaacccacaaatgctgacgctccagatactcaactagtctaaagaaggccagttgtattgcttctttaatcaggacaacagttttcagctgtgctaacacaattgcaaaagggttttctaatgatcaactagccttttaaaaGGATAAACTTAGATCAGCTAACACAGTGggccactggaacacaggagtgacggttgctgataatgggcctccattaaaatcagccgtttccagctataatagtcatttacaacattaaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252494 True 723 lncRNA 0.41 1 8163294 8164016

Neighbor

gene id symbol gene type direction distance location
efna1b LOC106574320 coding upstream 3898 8148407 ~ 8159396 (+)
LOC110513974 efna3 coding upstream 76842 7941302 ~ 8086452 (+)
LOC110508507 LOC106575080 coding upstream 535327 7618368 ~ 7627967 (+)
LOC110508431 LOC106575520 coding upstream 662757 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 715412 7437011 ~ 7447882 (+)
LOC110520790 LOC106606111 coding downstream 6618 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 81212 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 85737 8249753 ~ 8254163 (+)
LOC110520886 LOC106575974 coding downstream 101064 8265080 ~ 8266671 (+)
LOC110520887 LOC106606015 coding downstream 123949 8287965 ~ 8291009 (+)
G221242 NA non-coding upstream 43218 8119629 ~ 8120076 (+)
G221153 NA non-coding upstream 76032 8086667 ~ 8087262 (+)
G221141 NA non-coding upstream 228936 7930997 ~ 7934358 (+)
G221077 NA non-coding upstream 312442 7850638 ~ 7850852 (+)
G220680 NA non-coding upstream 355631 7807308 ~ 7807663 (+)
G221232 NA non-coding downstream 47643 8211659 ~ 8214241 (+)
G221306 NA non-coding downstream 119617 8283633 ~ 8328759 (+)
LOC118945294 NA non-coding downstream 149814 8313790 ~ 8328604 (+)
LOC110520859 LOC106606012 non-coding downstream 253104 8415151 ~ 8417910 (+)
G220445 LOC106575489 other upstream 781731 7378258 ~ 7381563 (+)
G220435 NA other upstream 798009 7359668 ~ 7365285 (+)
LOC110536044 LOC106575458 other upstream 809664 7348131 ~ 7357408 (+)
LOC110508323 LOC106575347 other upstream 1176772 6979131 ~ 6988449 (+)
G221299 s10i other downstream 235055 8399071 ~ 8489067 (+)
G221514 NA other downstream 564961 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 597318 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 610031 8772336 ~ 8800464 (+)

Expression


Co-expression Network