G221707


Basic Information

Item Value
gene id G221707
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8175399 ~ 8183561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU253063
gaatactttcgcaaggcactgtacgacCCAAATAAAAACACAACGTGCACATGCACACGAAGACATACGACCCAAATAAAAACTTTGTGTATGAAACACAATACGAATGGAATTCTTAGTCTTCCCTCAGTTCATGGATTTAGAGACCAAGTACCGATGATGTAGAGTACATGCCATGTCTGCTTAGAGTAGGGAAAGGGTTGCAAAACtccaggaactttcaataaattccctggttttccagaaatcctggttggagggcTCCAGATTTCCTTCTTATTCCCTTCAGATTCTGTGAATCCCCCAACCGGGATGTCTGGAAAAACAAGTTCCTGGAGTTTGGCAACCCTAGTAGGGATGGACAACAGAGGGCTCTACACCCCAGCTACAACTAGTACTACTAGGAGCACACAGTCCTGCCTCTTCATCTCTCCGTGGTACTTAACTGATCCATTCATATAACTGATTAACTAGCGAGTCTAGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTattcagtgctttcagaaagtattatttagcctcattctaaaatggattttaaaaataaaataatcatcCTCACCAATCTTAAACAATAGCCAATgatgacagagagaaaacaggtttATATACATTTCTGCAAAtctataaaaaaaacagaaatacctttatttacataagtattcagaccctttgcgatgagactcgaaattgagctcaggtgcatcctgtttccattgatccggtttccatccttgagatgtttctacaacttgattggactccatctgctgtaaattcaattgattggacataatttggaaatgcacacacctgtctatataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagacatgaggtcaaaggaattgtccatagagctccgagacaggattgtgaagaggaacagatctggggaaaggtacaaaaacatttctgcagcattgaaggtccaagaacacagtggcctccatcgttcttaaagtgaagaagtttggaaccagcaagactcttcctagagctgcgcccggacaaattgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacactgacagagctcctctgtggagatgggagaaccttccagaaggacaaccatctctgcaacattcCACTAATCActcctttatgatagagtggctagacagaagccactcctggcctgaatgccaagcatcatatctggatgaaacctggcaccatccctgaggtgaagcatggtggtggcagcatcaggcggtggggatgtttttcagcggcagggactaggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgcaccagagtgctcaggacctccgactggggcaaaggttcacctcccaacaggataatgaccctaagcacacagccaagacaaggctggacttgaacccggtctaacatctctggagagacctgaaaatagttgtgtagCAACGTTCCCATCCTacctgacagagtttgaaaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagctcgtagtgtcatacccaagaagactcgaggctgtaatcgctaccaaaggtgcttcaacaaagtactgagtaaagggtctgaataattatgtaaatctgatatttccattttataaatgtacaaaataaaaacaattaaacctctttgctttgtcattatgggatattgtgtgtagattgatgaggaaaagaaacaatttaatacattttagaataacgtaacaaaatgtggaaaaactcgaggagtctgaaaactttccaaatgcactgtacgtcTAGTTAAAAGAGAAGGATAACAACCCAGCAGATACTGTGGCTACCAGGAACAGTTGTTCACCCCTAGTTCACAGGGTACCATAGTGATGAGGACAGACAAGTCAACTATAAAGGTGAGGGGTTCTCAAACCCCACTAGAGGCGGGATCATCCTGCCCTGTTAGTTAGAGCGATTCAACCAATAGCAGCGCATTGATGCTGAGCAAAAAACCTCCCACTGGGTAACAGAGACTGCTGTGATTGACAGGGCAGGACTGTCCCACCCATGGTTGAGTTCTCAGTAATGATGTCCCAGACTAGTACAGAAGGCACAAAAAGGAAGTGGTGGAGGGAGAAAGACGAGGAAGATGCCCCtaaccactgatacagggtcagatattTATTCATCATTTTTCATCCCCCCATTGCTAGGGTactctgatcctagatctgtgattAGGGACAGCTTCTGCCTTGAGAGGAGAAAGTGTTCTTAAACCCCTGGTGGGTAGGAGTGATCATGAATCACTTACAATATGAGTAACAATATCAGTGATTGACAGCCTGACCATGATAGGGTCAAGAAgcctgttttctctctcccttgtAACCATTGGTGTGAGTCTCCAGCCACTTAGATTTCGATGAGCTTATAGGATGGCACGCCTTGATTGACAGATGCAAATCTCCAGAACAGGAAGAACCGGATGAGACTGGTCACAATGCCTGGCGTGTTTGGAAC
>TU253064
tgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacgacCCAAATAAAAACACAACGTGCACATGCACACGAAGACATACGACCCAAATAAAAACTTTGTGTATGAAACACAATACGAATGGAATTCTTAGTCTTCCCTCAGTTCATGGATTTAGAGACCAAGTACCGATGATGTAGAGTACATGCCATGTCTGCTTAGAGTAGGGAAAGGGTTGCAAAACtccaggaactttcaataaattccctggttttccagaaatcctggttggagggcTCCAGATTTCCTTCTTATTCCCTTCAGATTCTGTGAATCCCCCAACCGGGATGTCTGGAAAAACAAGTTCCTGGAGTTTGGCAACCCTAGTAGGGATGGACAACAGAGGGCTCTACACCCCAGCTACAACTAGTACTACTAGGAGCACACAGTCCTGCCTCTTCATCTCTCCGTGGTACTTAACTGATCCATTCATATAACTGATTAACTAGCGAGTCTAGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTattcagtgctttcagaaagtattatttagcctcattctaaaatggattttaaaaataaaataatcatcCTCACCAATCTTAAACAATAGCCAATgatgacagagagaaaacaggtttATATACATTTCTGCAAAtctataaaaaaaacagaaatacctttatttacataagtattcagaccctttgcgatgagactcgaaattgagctcaggtgcatcctgtttccattgatccggtttccatccttgagatgtttctacaacttgattggactccatctgctgtaaattcaattgattggacataatttggaaatgcacacacctgtctatataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagacatgaggtcaaaggaattgtccatagagctccgagacaggattgtgaagaggaacagatctggggaaaggtacaaaaacatttctgcagcattgaaggtccaagaacacagtggcctccatcgttcttaaagtgaagaagtttggaaccagcaagactcttcctagagctgcgcccggacaaattgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacactgacagagctcctctgtggagatgggagaaccttccagaaggacaaccatctctgcaacattcCACTAATCActcctttatgatagagtggctagacagaagccactcctggcctgaatgccaagcatcatatctggatgaaacctggcaccatccctgaggtgaagcatggtggtggcagcatcaggcggtggggatgtttttcagcggcagggactaggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgcaccagagtgctcaggacctccgactggggcaaaggttcacctcccaacaggataatgaccctaagcacacagccaagacaaggctggacttgaacccggtctaacatctctggagagacctgaaaatagttgtgtagCAACGTTCCCATCCTacctgacagagtttgaaaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagctcgtagtgtcatacccaagaagactcgaggctgtaatcgctaccaaaggtgcttcaacaaagtactgagtaaagggtctgaataattatgtaaatctgatatttccattttataaatgtacaaaataaaaacaattaaacctctttgctttgtcattatgggatattgtgtgtagattgatgaggaaaagaaacaatttaatacattttagaataacgtaacaaaatgtggaaaaactcgaggagtctgaaaactttccaaatgcactgtacgtcTAGTTAAAAGAGAAGGATAACAACCCAGCAGATACTGTGGCTACCAGGAACAGTTGTTCACCCCTAGTTCACAGGGTACCATAGTGATGAGGACAGACAAGTCAACTATAAAGGTGAGGGGTTCTCAAACCCCACTAGAGGCGGGATCATCCTGCCCTGTTAGTTAGAGCGATTCAACCAATAGCAGCGCATTGATGCTGAGCAAAAAACCTCCCACTGGGTAACAGAGACTGCTGTGATTGACAGGGCAGGACTGTCCCACCCATGGTTGAGTTCTCAGTAATGATGTCCCAGACTAGTACAGAAGGCACAAAAAGGAAGTGGTGGAGGGAGAAAGACGAGGAAGATGCCCCtaaccactgatacagggtcagatattTATTCATCATTTTTCATCCCCCCATTGCTAGGGTactctgatcctagatctgtgattAGGGACAGCTTCTGCCTTGAGAGGAGAAAGT
>TU253065
aagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacgacCCAAATAAAAACACAACGTGCACATGCACACGAAGACATACGACCCAAATAAAAACTTTGTGTATGAAACACAATACGAATGGAATTCTTAGTCTTCCCTCAGTTCATGGATTTAGAGACCAAGTACCGATGATGTAGAGTACATGCCATGTCTGCTTAGAGTAGGGAAAGGGTTGCAAAACtccaggaactttcaataaattccctggttttccagaaatcctggttggagggcTCCAGATTTCCTTCTTATTCCCTTCAGATTCTGTGAATCCCCCAACCGGGATGTCTGGAAAAACAAGTTCCTGGAGTTTGGCAACCCTAGTAGGGATGGACAACAGAGGGCTCTACACCCCAGCTACAACTAGTACTACTAGGAGCACACAGTCCTGCCTCTTCATCTCTCCGTGGTACTTAACTGATCCATTCATATAACTGATTAACTAGCGAGTCTAGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTattcagtgctttcagaaagtattatttagcctcattctaaaatggattttaaaaataaaataatcatcCTCACCAATCTTAAACAATAGCCAATgatgacagagagaaaacaggtttATATACATTTCTGCAAAtctataaaaaaaacagaaatacctttatttacataagtattcagaccctttgcgatgagactcgaaattgagctcaggtgcatcctgtttccattgatccggtttccatccttgagatgtttctacaacttgattggactccatctgctgtaaattcaattgattggacataatttggaaatgcacacacctgtctatataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagacatgaggtcaaaggaattgtccatagagctccgagacaggattgtgaagaggaacagatctggggaaaggtacaaaaacatttctgcagcattgaaggtccaagaacacagtggcctccatcgttcttaaagtgaagaagtttggaaccagcaagactcttcctagagctgcgcccggacaaattgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacactgacagagctcctctgtggagatgggagaaccttccagaaggacaaccatctctgcaacattcCACTAATCActcctttatgatagagtggctagacagaagccactcctggcctgaatgccaagcatcatatctggatgaaacctggcaccatccctgaggtgaagcatggtggtggcagcatcaggcggtggggatgtttttcagcggcagggactaggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgcaccagagtgctcaggacctccgactggggcaaaggttcacctcccaacaggataatgaccctaagcacacagccaagacaaggctggacttgaacccggtctaacatctctggagagacctgaaaatagttgtgtagCAACGTTCCCATCCTacctgacagagtttgaaaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagctcgtagtgtcatacccaagaagactcgaggctgtaatcgctaccaaaggtgcttcaacaaagtactgagtaaagggtctgaataattatgtaaatctgatatttccattttataaatgtacaaaataaaaacaattaaacctctttgctttgtcattatgggatattgtgtgtagattgatgaggaaaagaaacaatttaatacattttagaataacgtaacaaaatgtggaaaaactcgaggagtctgaaaactttccaaatgcactgtacgtcTAGTTAAAAGAGAAGGATAACAACCCAGCAGATACTGTGGCTACCAGGAACAGTTGTTCACCCCTAGTTCACAGGGTACCATAGTGATGAGGACAGACAAGTCAACTATAAAGGTGAGGGGTTCTCAAACCCCACTAGAGGCGGGATCATCCTGCCCTGTTAGTTAGAGCGATTCAACCAATAGCAGCGCATTGATGCTGAGCAAAAAACCTCCCACTGGGTAACAGAGACTGCTGTGATTGACAGGGCAGGACTGTCCCACCCATGGTTGAGTTCTCAGTAATGATGTCCCAGACTAGTACAGAAGGCACAAAAAGGAAGTGGTGGAGGGAGAAAGACGAGGAAGATGCCCCtaaccactgatacagggtcagatattTATTCATCATTTTTCATCCCCCCATTGCTAGGGTactctgatcctagatctgtgattAGGGACAGCTTCTGCCTTGAGAGGAGAAAGT

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253063 False 2674 lncRNA 0.44 2 8175399 8178098
TU253064 False 2465 lncRNA 0.44 3 8175652 8183561
TU253065 True 2463 lncRNA 0.44 2 8175652 8178140

Neighbor

gene id symbol gene type direction distance location
si:dkey-246i14.3 LOC106570832 coding downstream 334924 7744358 ~ 7840475 (-)
LOC110520788 LOC106593005 coding downstream 558206 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 599785 7573853 ~ 7575614 (-)
LOC110508494 LOC106575071 coding downstream 601880 7554786 ~ 7573519 (-)
LOC110508481 LOC106573839 coding downstream 623372 7531548 ~ 7552027 (-)
LOC110520794 LOC105024462 coding upstream 31031 8214332 ~ 8243743 (-)
LOC110520844 LOC106605887 coding upstream 283375 8466936 ~ 8495390 (-)
LOC110520892 LOC106605923 coding upstream 515474 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 517902 8701463 ~ 8701598 (-)
LOC118964372 NA coding upstream 518322 8701883 ~ 8702017 (-)
G221702 NA non-coding downstream 8607 8166259 ~ 8166792 (-)
G221701 NA non-coding downstream 10626 8164457 ~ 8164773 (-)
G221667 NA non-coding downstream 58698 8115184 ~ 8116701 (-)
G221642 NA non-coding downstream 88146 8086667 ~ 8087253 (-)
G221148 NA non-coding downstream 237572 7937543 ~ 7937827 (-)
G221696 NA non-coding upstream 28080 8211641 ~ 8214242 (-)
G221719 NA non-coding upstream 41439 8225000 ~ 8225310 (-)
G221720 NA non-coding upstream 69673 8253234 ~ 8254152 (-)
G221734 NA non-coding upstream 78589 8262150 ~ 8262373 (-)
LOC110508472 LOC106573847 other downstream 645082 7528026 ~ 7530317 (-)
LOC110508454 s10ag other downstream 650907 7517195 ~ 7524544 (-)
LOC110520792 LOC106575505 other downstream 739228 7408252 ~ 7436195 (-)
G220751 NA other downstream 973978 7176392 ~ 7201421 (-)
G221788 LOC106574877 other upstream 165758 8345683 ~ 8350289 (-)
G221806 NA other upstream 210800 8394361 ~ 8410809 (-)
G221807 adar other upstream 319623 8503184 ~ 8523208 (-)
G221986 NA other upstream 579558 8763119 ~ 8763884 (-)
LOC110520835 ash1l other upstream 621136 8804651 ~ 8839679 (-)

Expression


Co-expression Network