G221737


Basic Information

Item Value
gene id G221737
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8266311 ~ 8331740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU253118
GAGTGGGAAAGCCAGTGTTTATTCACAACAGTAAGACTTAGTTATAAAATGACTTATTTGACGTATAGAAAAGCAAAATGACATATAGAAAAGCATCCATCTCTGCTTCTCTTTCTCCTTGTCCTGTCCTCCCTCACTTCTTAGCAGCAACCTTTTGGGTGTGGAGCTGGAAGATCTGTTCACAGGCGATGGAGAGGCCCACCACCAGAGAGACAAACTCCTCGAAGCTCACCTTCCCATCACCATTCTGGTCCAGATCCTTCATTATCTTGTCTATGGCAGCTGGGTCCTTCTGGGactgagagggaaggagagatggaaagaatgactaagagagagagatgggaggaggggacTTTGG
>TU253119
GAGTGGGAAAGCCAGTGTTTATTCACAACAGTAAGACTTAGTTATAAAATGACTTATTTGACGTATAGAAAAGCAAAATGACATATAGAAAAGCATCCATCTCTGCTTCTCTTTCTCCTTGTCCTGTCCTCCCTCACTTCTTAGCAGCAACCTTTTGGGTGTGGAGCTGGAAGATCTGTTCACAGGCGATGGAGAGGCCCACCACCAGAGAGACAAACTCCTCGAAGCTCACCTTCCCATCACCATTCTGGTCCAGATCCTTCATTATCTTGTCTATGGCAGCTGGGTCCTTCTGGGactgagagggaaggagagatgaaggagatgaagagagtaagtgtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagagaaatcCCGAGTGGCGTAGCtggctaaggcactgcatctcagtgctagatgcgtcactacagacacccccgagggcggcgcacaattggcccagcgttgtccaggttttgGCCAGTGTAGGCGATCATTGCAAGTAAGAATTTGAAAGAAAGTGAAAGGGGGACAAGAAATACAGGGaaagtatagagggacagtaagataaaaacagagagagagagagagagagagagagggatgtcagTGTTACCTTCAGGAAGCTGGCCAGTTCTGTCTGCATCAGCTCTTTCAGCTCCTTCTTGCTCAGTGTGTTACAGTCACCGTCCTTGTCGGCATAGCGATGAAACACCGTGATCAGGGACTCCATGGAACTCTCCAACTGAGACGGCATGGCTGCAGAGAAGGATAcacAACAGTGGAGAGACGCTAACAAAACAGGGTGGGGAAGTAGCGTACTGCTGAATATATACCAATGATGTTGAATATATACCAATGATGCTGAATCTACTGCGCCATAGCGATGGAACACCGTGATCAGGGACTGCATGGATCTCTCCAACTGAGACAGCATGGCTGCAGAGAGAAGGATA

Function

NR:

description
s100 calcium binding protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253118 False 361 lncRNA 0.47 2 8266311 8331740
TU253119 True 976 lncRNA 0.48 3 8290402 8331740

Neighbor

gene id symbol gene type direction distance location
LOC110520794 LOC105024462 coding downstream 22568 8214332 ~ 8243743 (-)
si:dkey-246i14.3 LOC106570832 coding downstream 425836 7744358 ~ 7840475 (-)
LOC110520788 LOC106593005 coding downstream 649118 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 690697 7573853 ~ 7575614 (-)
LOC110508494 LOC106575071 coding downstream 692792 7554786 ~ 7573519 (-)
LOC110520844 LOC106605887 coding upstream 135196 8466936 ~ 8495390 (-)
LOC110520892 LOC106605923 coding upstream 367295 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 369723 8701463 ~ 8701598 (-)
LOC118964372 NA coding upstream 370143 8701883 ~ 8702017 (-)
LOC110520835 ash1l coding upstream 472911 8804651 ~ 8839679 (-)
G221736 NA non-coding downstream 1587 8264521 ~ 8264724 (-)
G221734 NA non-coding downstream 3938 8262150 ~ 8262373 (-)
G221720 NA non-coding downstream 12159 8253234 ~ 8254152 (-)
G221719 NA non-coding downstream 41001 8225000 ~ 8225310 (-)
G221788 LOC106574877 non-coding upstream 13943 8345683 ~ 8350289 (-)
G221792 NA non-coding upstream 20452 8352192 ~ 8352678 (-)
G221794 NA non-coding upstream 26842 8358582 ~ 8363578 (-)
G221806 NA non-coding upstream 62621 8394361 ~ 8410809 (-)
G221825 NA non-coding upstream 81922 8413662 ~ 8414030 (-)
LOC110508472 LOC106573847 other downstream 735994 7528026 ~ 7530317 (-)
LOC110508454 s10ag other downstream 741819 7517195 ~ 7524544 (-)
LOC110520792 LOC106575505 other downstream 830140 7408252 ~ 7436195 (-)
G220751 NA other downstream 1064890 7176392 ~ 7201421 (-)
G221807 adar other upstream 171444 8503184 ~ 8523208 (-)
G221986 NA other upstream 431379 8763119 ~ 8763884 (-)

Expression


Co-expression Network