G221788 (LOC106574877)


Basic Information

Item Value
gene id G221788
gene name LOC106574877
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8345683 ~ 8350289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU253178
AGCAAGTCagatttaatttaaaaaacaggGGAAATGTTGAGAAGACATCTTAAAAGCACCATACTATCATAGAAaagcagtgtgtgtctgtgtctcgatACTGGCCACACTTGTCAACAGGTTCTTTTTCGCCCCTCATTCAGGCTTGTCAGGCTTGCCCTTGTTGCCCTTGCCCTTGTTTCTGGCTCTGTAGTAGCCCCTGGCCAGAGTAGCCAAGAACATGGAGAACTCTCTGAAGTTGATCTCCCCATCATGGTTCTTATCCAGGTTGGTCATCGCCTCCTGGAGCACTGCTGGTTCCACCTTtctgGAACTCTGGGCTGGCCAGCTCTTTCTTCATCAGCTCTGCGAGCTCTGTACCGCTAAGCTGGCGATTCTTATCATCCTTTGTAGCATACTCCTCAAACACCTCCACCATGGATACAATGGCCTTCTCCAGACAAGACATACTGtaccTCAGAGCAGAAGATAAGATCTATGATATGTGTAGCTGGCCGGCTGGGTCCTGATGTGAGACtgatgtgagacagagagaagaaaagTTTCCTCTTAA
>TU253177
AGCAAGTCagatttaatttaaaaaacaggGGAAATGTTGAGAAGACATCTTAAAAGCACCATACAAGTTACAGTAAGTGTATCATTTTCTCTCTTCTATCATAGAAaagcagtgtgtgtctgtgtctcgatACTGGCCACACTTGTCAACAGGTTCTTTTTCGCCCCTCATTCAGGCTTGTCAGGCTTGCCCTTGTTGCCCTTGCCCTTGTTTCTGGCTCTGTAGTAGCCCCTGGCCAGAGTAGCCAAGAACATGGAGAACTCTCTGAAGTTGATCTCCCCATCATGGTTCTTATCCAGGTTGGTCATCGCCTCCTGGAGCACTGCTGGTTCCACCTTtccgtgGAACTCTGGGCTGGCCAGCTCTTTCTTCATCAGCTCTGCGAGCTCTGTACCGCTAAGCTGGCGATTCTTATCATCCTTTGTAGCATACTCCTCAAACACCTCCACCATGGATACAATGGCCTTCTCCAGACAAGACATACTGtacctgggggagagagaggaggaggcaggtggacggagagagagttgggaagaggggatgagagaaagagggaggcag

Function

NR:

description
PREDICTED: protein S100-A5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253178 False 553 lncRNA 0.48 4 8345683 8350289
TU253177 True 564 TUCP 0.49 2 8349319 8350289

Neighbor

gene id symbol gene type direction distance location
LOC110520794 LOC105024462 coding downstream 101940 8214332 ~ 8243743 (-)
si:dkey-246i14.3 LOC106570832 coding downstream 505208 7744358 ~ 7840475 (-)
LOC110520788 LOC106593005 coding downstream 728490 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 770069 7573853 ~ 7575614 (-)
LOC110508494 LOC106575071 coding downstream 772164 7554786 ~ 7573519 (-)
LOC110520844 LOC106605887 coding upstream 116647 8466936 ~ 8495390 (-)
LOC110520892 LOC106605923 coding upstream 348746 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 351174 8701463 ~ 8701598 (-)
LOC118964372 NA coding upstream 351594 8701883 ~ 8702017 (-)
LOC110520835 ash1l coding upstream 454362 8804651 ~ 8839679 (-)
G221737 NA non-coding downstream 13943 8266311 ~ 8331740 (-)
G221738 NA non-coding downstream 57079 8265465 ~ 8288604 (-)
G221736 NA non-coding downstream 80959 8264521 ~ 8264724 (-)
G221734 NA non-coding downstream 83310 8262150 ~ 8262373 (-)
G221720 NA non-coding downstream 91531 8253234 ~ 8254152 (-)
G221792 NA non-coding upstream 1903 8352192 ~ 8352678 (-)
G221794 NA non-coding upstream 8293 8358582 ~ 8363578 (-)
G221806 NA non-coding upstream 44072 8394361 ~ 8410809 (-)
G221825 NA non-coding upstream 63373 8413662 ~ 8414030 (-)
G221835 NA non-coding upstream 75389 8425678 ~ 8426117 (-)
LOC110508472 LOC106573847 other downstream 815366 7528026 ~ 7530317 (-)
LOC110508454 s10ag other downstream 821191 7517195 ~ 7524544 (-)
LOC110520792 LOC106575505 other downstream 909512 7408252 ~ 7436195 (-)
G220751 NA other downstream 1144262 7176392 ~ 7201421 (-)
G221807 adar other upstream 152895 8503184 ~ 8523208 (-)
G221986 NA other upstream 412830 8763119 ~ 8763884 (-)
G222023 LOC100136250 other upstream 503528 8853817 ~ 8949187 (-)

Expression


Co-expression Network