G221880


Basic Information

Item Value
gene id G221880
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8628683 ~ 8630117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU253295
ATAAAATAAAATTACAAAATCATTTCACCCTCAAACGCACCTCCCTTGtccattatttattattattaaagtttattattaatacatttaTCATTAATTGTCAGGACGAATGAGAagaatactatagtataataatagtagaTATTAGCTATAACCGTTAAATCGTAATGGTAGAAAAGACTGCGCAATACAAAGCTATGTAGATTTCAGTAACAGTATACTTACTGTACAGTACAATATTCCAAGCGGGTGTAATTCAGTATTCCGGCCACAGAATGTCACTATAAGACAGTTTTCAAAAGGGTCTCCGTAGAAATAGAAATCTTATTCCATCACATCATAATAATTATTCTCTCAGATATATAGTCTCTCCCTCTATAGGGTTAAGTTTTGTAAGCAACCGTTTCTCTCTTGCCATGGCCTGTATCCTTTGTCTGGTTAATATTCCTTCATTCCCTGTCTATGGCAGTCCATCGAGCACAGTGAAAAGTGCCGTCCACAAAGCACTAGTACTAGTCCAAATCCAATGTTCCTTGAAAAACATTGTCGGGAAATCTGAAactcctcttcccatctccccAGTGACATCCTCTTCTGCCTCTCTTTTGTAGTCCATTTGAGAGAGAGCACTTTGgtagattatgtgtgtgtgtccacatgtgGGTGTGGTTcagcgtgtatgtgtgtgggtttaGGCATATCTGTGCCCCTGTGCAAACGGTGTGCTTGtggtttgaaatgtacagcaTACATTCATTAAAACAGAGTTTTGGGGACATGTGTGCATAAGGAAATATGGCAGTAGTGTTTCCTTGGACCGTGTCTATGCTCTGTGTCAAGTAATAAATGCCTGGCAGTATGTTCTTTTCAGTTGGACTTAGTGCATTGTCTGCTTAGCAGTAATAGGCTATTCTATAGTGTTTTATAGTCTACTATAGAATGCGGCGCGATATTGTGTGCTattttatgtgtttgtgtgtgtgtgtttgctgtgtaTTTTGTTGTAGTGTGTTTATGttgccatggtgtgtgtgtatgtgtgtgttaaaaGGTAGGCATACTACATggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtttagtATGTATTATGGTCGTTGATTAAATGGTTAGTTAAAGGGATGCTCGTTACCACACAAGTAGCAGTTAGATAGAAAATAGATCATAAGGacaaaaagtcatagtcaatcattcctgatggagggatgggagggaagagggcgagagatggagggagagaaagagatgaagagaaagagggatagagagggacaaATGGAAAAAGAGAGGAAGACGTTTTCCTGTCATTAGATTGGATTCCATTAAAGACCTCTGTAATTAGTCCAGGTTATCT
>TU253296
ATAAAATAAAATTACAAAATCATTTCACCCTCAAACGCACCTCCCTTGtccattatttattattattaaagtttattattaatacatttaTCATTAATTGTCAGGACGAATGAGAagaatactatagtataataatagtagaTATTAGCTATAACCGTTAAATCGTAATGGTAGAAAAGACTGCGCAATACAAAGCTATGTAGATTTCAGTAACAGTATACTTACTGTACAGTACAATATTCCAAGCGGGTGTAATTCAGTATTCCGGCCACAGAATGTCACTATAAGACAGTTTTCAAAAGGGTCTCCGTAGAAATAGAAATCTTATTCCATCACATCATAATAATTATTCTCTCAGATATATAGTCTCTCCCTCTATAGGGTTAAGTTTTGTAAGCAACCGTTTCTCTCTTGCCATGGCCTGTATCCTTTGTCTGGTTAATATTCCTTCATTCCCTGTCTATGGCAGTCCATCGAGCACAGTGAAAAGTGCCGTCCACAAAGCACTAGTACTAGTCCAAATCCAATGTTCCTTGAAAAACATTGTCGGGAAATCTGAAactcctcttcccatctccccAGTGACATCCTCTTCTGCCTCTCTTTTGTAGTCCATTTGAGAGAGAGCACTTTGgtagattatgtgtgtgtgtccacatgtgGGTGTGGTTcagcgtgtatgtgtgtgggtttaGGCATATCTGTGCCCCTGTGCAAACGGTGTGCTTGtggtttgaaatgtacagcaTACATTCATTAAAACAGAGTTTTGGGGACATGTGTGCATAAGGAAATATGGCAGTAGTGTTTCCTTGGACCGTGTCTATGCTCTGTGTCAAGTAATAAATGCCTGGCAGTATGTTCTTTTCAGTTGGACTTAGTGCATTGTCTGCTTAGCAGTAATAGGCTATTCTATAGTGTTTTATAGTCTACTATAGAATGCGGCGCGATATTGTGTGCTattttatgtgtttgtgtgtgtgtgtttgctgtgtaTTTTGTTGTAGTGTGTTTATGttgccatggtgtgtgtgtatgtgtgtgttaaaaGGTAGGCATACTACATggagagtgtgtgtgtgtgtgtgtgtgtgtggtgtttagtATGTATTATGGTCGTTGATTAAATGGTTAGTTAAAGGGATGCTCGTTACCACACAAGTAGCAGTTAGATAGAAAATAGATCATAAGGacaaaaagtcatagtcaatcattcctgatggagggatgggagggaagagggcgagagatggagggagagaaagagatgaagagaaagagggatagagagggacaaATGGAAAAAGAGAGGAAGACGTTTTCCTGTCATTAGATTGGATTCCATTAAAGACCTCTGTAATTAGTCCAGGTTATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253295 False 1392 lncRNA 0.39 2 8628683 8630117
TU253296 True 1376 lncRNA 0.39 2 8628683 8630117

Neighbor

gene id symbol gene type direction distance location
LOC110520844 LOC106605887 coding downstream 133293 8466936 ~ 8495390 (-)
LOC110520794 LOC105024462 coding downstream 384940 8214332 ~ 8243743 (-)
si:dkey-246i14.3 LOC106570832 coding downstream 788208 7744358 ~ 7840475 (-)
LOC110520788 LOC106593005 coding downstream 1011490 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 1053069 7573853 ~ 7575614 (-)
LOC110520892 LOC106605923 coding upstream 68918 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 71346 8701463 ~ 8701598 (-)
LOC118964372 NA coding upstream 71766 8701883 ~ 8702017 (-)
LOC110520835 ash1l coding upstream 174534 8804651 ~ 8839679 (-)
LOC110516769 LOC100136250 coding upstream 223698 8853815 ~ 8862231 (-)
G221922 NA non-coding downstream 17299 8609137 ~ 8611384 (-)
G221896 NA non-coding downstream 58054 8567672 ~ 8570629 (-)
G221863 NA non-coding downstream 150857 8477456 ~ 8477826 (-)
G221855 NA non-coding downstream 164137 8461540 ~ 8464546 (-)
G221852 NA non-coding downstream 171202 8454161 ~ 8457481 (-)
G221952 NA non-coding upstream 51395 8681512 ~ 8682295 (-)
G221960 NA non-coding upstream 63257 8693374 ~ 8693897 (-)
G221961 NA non-coding upstream 63874 8693991 ~ 8694374 (-)
G221962 LOC106605922 non-coding upstream 64450 8694567 ~ 8694802 (-)
G221963 NA non-coding upstream 64727 8694844 ~ 8695076 (-)
G221807 adar other downstream 105475 8503184 ~ 8523208 (-)
G221806 NA other downstream 217874 8394361 ~ 8410809 (-)
G221788 LOC106574877 other downstream 278394 8345683 ~ 8350289 (-)
LOC110508494 LOC106575071 other downstream 1055211 7554786 ~ 7573519 (-)
LOC110508472 LOC106573847 other downstream 1098366 7528026 ~ 7530317 (-)
G221986 NA other upstream 133002 8763119 ~ 8763884 (-)
G222023 LOC100136250 other upstream 223700 8853817 ~ 8949187 (-)
G222465 NA other upstream 463063 9093180 ~ 9095216 (-)
LOC110501040 LOC106605812 other upstream 480856 9101425 ~ 9118437 (-)

Expression


Co-expression Network