XLOC_021831


Basic Information

Item Value
gene id XLOC_021831
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33978711 ~ 33983432 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043283
GCTTTTCACACCAGCTTTTTGGCCTCAAAGAAGCTCTTGAGGTGCTTCATTTGCCAGATGCCGGTGATGATGAGGATGACGGTCTGAGCGATGGACCACCACAAAACACGCTGGTTCGTGCTCTCGCTCGTCATGCGGAAACGCTCCTCACGTCGTACCAGTTTTCCACCTGCAAACAGTGCCATCTTGGTGGAGTTGGAGTGGAGGCAGATTTGATGCTCTcctggtgtgtgtgaggtgaaGGTAAAACGACCATCAGAGCCATACTGACGGGACAGGAtaacctgaaataaaaacaaagcaaaaactacCTCAGGGTTCTTGCACATTTTTACTACTTAaactccatgacttttccat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043283 True 360 lncRNA 0.48 2 33978711 33983432

Neighbor

gene id symbol gene type direction distance location
XLOC_021830 plpbp coding upstream 2595 33963619 ~ 33976116 (+)
XLOC_021829 snrpg coding upstream 16722 33957350 ~ 33961989 (+)
XLOC_021828 wu:fc63a07 coding upstream 25605 33934228 ~ 33953106 (+)
XLOC_021827 cs coding upstream 50395 33907899 ~ 33928316 (+)
XLOC_021825 CR381531.2 coding upstream 77374 33777519 ~ 33901337 (+)
XLOC_021832 fam50a coding downstream 3950 33987382 ~ 34023632 (+)
XLOC_021833 AL954678.1 coding downstream 19325 34002757 ~ 34002873 (+)
XLOC_021834 sars1 coding downstream 47118 34030550 ~ 34043651 (+)
XLOC_021835 chchd6a coding downstream 63981 34047413 ~ 34185019 (+)
XLOC_021836 plxna1a coding downstream 337805 34321237 ~ 34753811 (+)
XLOC_021826 CR381531.1 non-coding upstream 148521 33828665 ~ 33830190 (+)
XLOC_021824 CR354542.1 non-coding upstream 218046 33759747 ~ 33760665 (+)
XLOC_021821 CT027694.1 non-coding upstream 440542 33538051 ~ 33538169 (+)
XLOC_021820 NA non-coding upstream 519446 33455563 ~ 33459265 (+)
XLOC_021817 dre-mir-205 non-coding upstream 688350 33290273 ~ 33290361 (+)
XLOC_021837 NA non-coding downstream 781511 34764943 ~ 34768352 (+)
XLOC_021838 CR352218.1 non-coding downstream 866283 34849715 ~ 34987363 (+)
XLOC_021839 NA non-coding downstream 963015 34946447 ~ 34948499 (+)
XLOC_021841 CU459147.1 non-coding downstream 1212308 35195740 ~ 35208386 (+)

Expression


Co-expression Network